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3O20
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (23 KB)
Biol.Unit 3 (22 KB)
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(1)
Title
:
ELECTRON TRANSFER COMPLEXES:EXPERIMENTAL MAPPING OF THE REDOX-DEPENDENT CYTOCHROME C ELECTROSTATIC SURFACE
Authors
:
M. De March, R. De Zorzi, A. Casini, L. Messori, S. Geremia, N. Demitri C. Gabbiani, A. Guerri
Date
:
22 Jul 10 (Deposition) - 25 Jan 12 (Release) - 25 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Globular Protein, Electron Carrier, Mitochondrial Respiration, Electron Trasport Chain, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. De March, R. De Zorzi, A. Casini, L. Messori, S. Geremia
Electron Transfer Complexes:Experimental Mapping Of The Redox-Dependent Cytochrome C Electrostatic Surface
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
3a: NITRATE ION (NO3a)
3b: NITRATE ION (NO3b)
3c: NITRATE ION (NO3c)
3d: NITRATE ION (NO3d)
3e: NITRATE ION (NO3e)
3f: NITRATE ION (NO3f)
3g: NITRATE ION (NO3g)
3h: NITRATE ION (NO3h)
3i: NITRATE ION (NO3i)
3j: NITRATE ION (NO3j)
3k: NITRATE ION (NO3k)
3l: NITRATE ION (NO3l)
3m: NITRATE ION (NO3m)
3n: NITRATE ION (NO3n)
3o: NITRATE ION (NO3o)
3p: NITRATE ION (NO3p)
3q: NITRATE ION (NO3q)
3r: NITRATE ION (NO3r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
3
Mod. Amino Acid
ACETYL GROUP
2
HEC
3
Ligand/Ion
HEME C
3
NO3
18
Ligand/Ion
NITRATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:13 , CYS A:14 , CYS A:17 , HIS A:18 , THR A:28 , GLY A:29 , PRO A:30 , THR A:40 , GLY A:41 , TYR A:48 , THR A:49 , ASN A:52 , TRP A:59 , LEU A:64 , TYR A:67 , LEU A:68 , THR A:78 , LYS A:79 , MET A:80 , ILE A:81 , PHE A:82 , LEU A:94 , HOH A:131 , HOH A:211
BINDING SITE FOR RESIDUE HEC A 105
02
AC2
SOFTWARE
VAL A:11 , HOH A:141 , HOH A:168 , PHE C:82 , ALA C:83 , GLY C:84
BINDING SITE FOR RESIDUE NO3 A 106
03
AC3
SOFTWARE
PHE A:82 , ALA A:83 , GLY A:84 , HOH A:179 , LYS B:8 , VAL B:11 , GLN B:12
BINDING SITE FOR RESIDUE NO3 A 107
04
AC4
SOFTWARE
LYS A:13 , GLY A:84 , LYS A:86 , LYS A:87 , GLU A:90
BINDING SITE FOR RESIDUE NO3 A 108
05
AC5
SOFTWARE
THR A:19 , VAL A:20 , GLU A:21 , HOH A:236 , THR C:28 , ILE C:81 , HOH C:124
BINDING SITE FOR RESIDUE NO3 A 109
06
AC6
SOFTWARE
THR A:28 , ILE A:81 , HOH A:178 , PHE B:10 , THR B:19 , VAL B:20 , GLU B:21
BINDING SITE FOR RESIDUE NO3 A 110
07
AC7
SOFTWARE
GLY A:77 , HOH A:132 , HOH A:261 , LYS C:39 , ILE C:57 , THR C:58 , LYS C:60 , THR C:63
BINDING SITE FOR RESIDUE NO3 A 111
08
AC8
SOFTWARE
GLY A:45 , PHE A:46 , THR A:47 , HOH A:118 , HOH A:180 , LYS B:53
BINDING SITE FOR RESIDUE NO3 A 112
09
AC9
SOFTWARE
LYS B:13 , CYS B:14 , GLN B:16 , CYS B:17 , HIS B:18 , THR B:28 , GLY B:29 , PRO B:30 , THR B:40 , GLY B:41 , TYR B:48 , THR B:49 , ASN B:52 , TRP B:59 , LEU B:64 , TYR B:67 , LEU B:68 , THR B:78 , LYS B:79 , MET B:80 , ILE B:81 , PHE B:82 , LEU B:94 , HOH B:119 , HOH B:135
BINDING SITE FOR RESIDUE HEC B 105
10
BC1
SOFTWARE
LYS A:53 , HIS B:26 , GLY B:45 , PHE B:46 , THR B:47 , HOH B:276 , LYS C:25
BINDING SITE FOR RESIDUE NO3 B 106
11
BC2
SOFTWARE
LYS B:27 , THR B:28 , NO3 B:111 , LYS C:25 , LYS C:27
BINDING SITE FOR RESIDUE NO3 B 107
12
BC3
SOFTWARE
PHE B:82 , ALA B:83 , GLY B:84 , HOH B:147 , HOH B:332 , VAL C:11
BINDING SITE FOR RESIDUE NO3 B 108
13
BC4
SOFTWARE
LYS B:13 , GLY B:84 , ILE B:85 , LYS B:86 , HOH B:163 , LYS C:8
BINDING SITE FOR RESIDUE NO3 B 109
14
BC5
SOFTWARE
LYS B:39 , GLY B:56 , ILE B:57 , THR B:58 , LYS B:60 , THR B:63 , HOH B:194 , HOH B:355 , GLY C:77 , HOH C:196
BINDING SITE FOR RESIDUE NO3 B 110
15
BC6
SOFTWARE
LYS A:25 , HIS A:26 , LYS A:27 , THR A:28 , HOH A:347 , LYS B:25 , LYS B:27 , NO3 B:107 , HOH B:133
BINDING SITE FOR RESIDUE NO3 B 111
16
BC7
SOFTWARE
LYS A:100 , PHE B:36 , LYS B:60 , GLU B:61 , LYS B:99 , HOH B:136
BINDING SITE FOR RESIDUE NO3 B 112
17
BC8
SOFTWARE
LYS A:39 , GLY A:56 , ILE A:57 , THR A:58 , LYS A:60 , HOH A:142 , GLY B:77 , HOH B:263 , HOH B:354
BINDING SITE FOR RESIDUE NO3 B 113
18
BC9
SOFTWARE
ALA A:15 , LYS C:13 , CYS C:14 , CYS C:17 , HIS C:18 , THR C:28 , GLY C:29 , PRO C:30 , THR C:40 , GLY C:41 , PHE C:46 , TYR C:48 , THR C:49 , ASN C:52 , TRP C:59 , TYR C:67 , LEU C:68 , THR C:78 , LYS C:79 , MET C:80 , ILE C:81 , PHE C:82 , LEU C:98 , HOH C:121 , HOH C:124 , HOH C:136
BINDING SITE FOR RESIDUE HEC C 105
19
CC1
SOFTWARE
GLU A:4 , LYS A:7 , LYS C:72 , ALA C:83
BINDING SITE FOR RESIDUE NO3 C 106
20
CC2
SOFTWARE
THR B:28 , ILE B:81 , THR C:19 , VAL C:20 , GLU C:21 , HOH C:117 , HOH C:318
BINDING SITE FOR RESIDUE NO3 C 107
21
CC3
SOFTWARE
LYS A:8 , HOH A:351 , LYS C:13 , GLY C:84 , ILE C:85 , LYS C:86 , HOH C:345
BINDING SITE FOR RESIDUE NO3 C 108
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:1-102,B:1-102,C:1-102)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC_HORSE
2-103
3
A:1-102
B:1-102
C:1-102
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3o20a_ (A:)
1b: SCOP_d3o20b_ (B:)
1c: SCOP_d3o20c_ (C:)
View:
Select:
Label:
Classes
(
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(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Horse (Equus caballus) [TaxId: 9796]
(21)
1a
d3o20a_
A:
1b
d3o20b_
B:
1c
d3o20c_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Protein
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Backbone
Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (71 KB)
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Header - Biol.Unit 1
Biol.Unit 2 (23 KB)
Header - Biol.Unit 2
Biol.Unit 3 (22 KB)
Header - Biol.Unit 3
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