PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3O14
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (80 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF AN ANTI-ECFSIGMA FACTOR, CHRR (MAQU_0586) FROM MARINOBACTER AQUAEOLEI VT8 AT 1.70 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
20 Jul 10 (Deposition) - 08 Sep 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Chrr, Cupin, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Anti-Ecfsigma Factor, Chrr (Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1. 70 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(5, 34)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
3a: NICOTINIC ACID (NIOa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
3
NIO
1
Ligand/Ion
NICOTINIC ACID
4
SO4
5
Ligand/Ion
SULFATE ION
5
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:58 , HIS A:60 , GLU A:64 , HIS A:94 , HOH A:322
BINDING SITE FOR RESIDUE ZN A 250
02
AC2
SOFTWARE
ARG A:30 , ARG A:35 , SER A:45 , VAL A:47 , VAL A:106 , HOH A:825
BINDING SITE FOR RESIDUE NIO A 300
03
AC3
SOFTWARE
TRP A:20 , ARG A:31 , ARG A:48 , EDO A:317 , HOH A:559 , HOH A:603
BINDING SITE FOR RESIDUE SO4 A 301
04
AC4
SOFTWARE
THR A:92 , SER A:93 , HOH A:518 , HOH A:542 , HOH A:621 , HOH A:714 , MSE B:1
BINDING SITE FOR RESIDUE SO4 A 305
05
AC5
SOFTWARE
VAL A:11 , VAL A:12 , HOH A:367 , GLU B:126 , THR B:136 , LEU B:138 , HOH B:401
BINDING SITE FOR RESIDUE EDO A 306
06
AC6
SOFTWARE
ASN A:4 , HOH A:378 , HOH A:448 , HOH A:847 , HOH B:588
BINDING SITE FOR RESIDUE EDO A 308
07
AC7
SOFTWARE
THR A:84 , SER A:120 , LYS A:121 , HOH A:626 , HOH A:783 , GLN B:17 , GLU B:19 , ARG B:21
BINDING SITE FOR RESIDUE EDO A 312
08
AC8
SOFTWARE
VAL A:95 , GLY A:97 , HOH A:534 , HOH A:831 , HOH A:859
BINDING SITE FOR RESIDUE EDO A 315
09
AC9
SOFTWARE
SO4 A:301 , HOH A:600
BINDING SITE FOR RESIDUE EDO A 317
10
BC1
SOFTWARE
THR A:146 , ALA A:162 , ALA A:163 , THR A:211 , GLY A:212 , HOH A:408
BINDING SITE FOR RESIDUE EDO A 318
11
BC2
SOFTWARE
ARG A:150 , SER A:160 , EDO A:321 , HOH A:382 , HOH A:703
BINDING SITE FOR RESIDUE EDO A 319
12
BC3
SOFTWARE
PRO A:10 , ASN A:178 , HOH A:373 , HOH A:668 , HOH A:770 , GLY B:128 , HOH B:691
BINDING SITE FOR RESIDUE EDO A 320
13
BC4
SOFTWARE
SER A:160 , GLU A:161 , ALA A:162 , EDO A:319
BINDING SITE FOR RESIDUE EDO A 321
14
BC5
SOFTWARE
HIS B:58 , HIS B:60 , GLU B:64 , HIS B:94 , HOH B:323
BINDING SITE FOR RESIDUE ZN B 250
15
BC6
SOFTWARE
THR B:92 , SER B:93 , ASN B:157 , HOH B:653 , HOH B:707 , HOH B:730 , HOH B:809
BINDING SITE FOR RESIDUE SO4 B 302
16
BC7
SOFTWARE
TRP B:20 , ARG B:31 , ARG B:48 , HOH B:767
BINDING SITE FOR RESIDUE SO4 B 303
17
BC8
SOFTWARE
HOH A:526 , ARG B:21 , ARG B:30 , MSE B:32 , HOH B:424 , HOH B:578
BINDING SITE FOR RESIDUE SO4 B 304
18
BC9
SOFTWARE
GLU A:19 , ARG A:21 , SER B:120 , LYS B:121 , ASN B:122 , HOH B:785
BINDING SITE FOR RESIDUE EDO B 307
19
CC1
SOFTWARE
GLY B:173 , ARG B:203 , GLY B:204 , ALA B:205 , LYS B:206 , HOH B:658
BINDING SITE FOR RESIDUE EDO B 309
20
CC2
SOFTWARE
ARG B:150 , SER B:160 , HOH B:403 , HOH B:836 , HOH B:840
BINDING SITE FOR RESIDUE EDO B 310
21
CC3
SOFTWARE
TYR B:80 , VAL B:86 , ASN B:88 , HOH B:340 , HOH B:480 , HOH B:871
BINDING SITE FOR RESIDUE EDO B 311
22
CC4
SOFTWARE
ASP B:16 , LEU B:18 , ARG B:31 , HOH B:604
BINDING SITE FOR RESIDUE EDO B 313
23
CC5
SOFTWARE
ARG B:116 , HOH B:872
BINDING SITE FOR RESIDUE EDO B 314
24
CC6
SOFTWARE
PRO B:10 , VAL B:12 , ASN B:178 , HOH B:608 , HOH B:623
BINDING SITE FOR RESIDUE EDO B 316
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (163 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3O14
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
