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3O10
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HEPN DOMAIN FROM HUMAN SACSIN
Authors
:
G. Kozlov, K. Gehring
Date
:
20 Jul 10 (Deposition) - 30 Mar 11 (Release) - 30 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
All-Helical Domain, Homodimerization, Chaperone
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Kozlov, A. Y. Denisov, M. Girard, M. J. Dicaire, J. Hamlin, P. S. Mcpherson, B. Brais, K. Gehring
Structural Basis Of Defects In The Sacsin Hepn Domain Responsible For Autosomal Recessive Spastic Ataxia Of Charlevoix-Saguenay (Arsacs).
J. Biol. Chem. V. 286 20407 2011
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: MALONATE ION (MLIa)
1b: MALONATE ION (MLIb)
1c: MALONATE ION (MLIc)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MLI
3
Ligand/Ion
MALONATE ION
2
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:13 , HOH A:124 , TYR A:4478 , LYS A:4482 , SER A:4533 , ARG A:4537 , ARG B:4537 , TYR B:4538
BINDING SITE FOR RESIDUE MLI A 1
2
AC2
SOFTWARE
ARG A:4537 , TYR A:4538 , HOH B:18 , HOH B:43 , HOH B:87 , HOH B:101 , TYR B:4478 , LYS B:4482 , SER B:4533
BINDING SITE FOR RESIDUE MLI B 1
3
AC3
SOFTWARE
HOH B:10 , SER B:4459 , ARG B:4462 , HOH D:7 , HOH D:42 , HOH D:59 , ARG D:4448 , ARG D:4452
BINDING SITE FOR RESIDUE MLI D 1
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_064825 (K4508T, chain A/B/C/D, )
2: VAR_064826 (N4549D, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064825
K
4508
T
SACS_HUMAN
Disease (SACS)
---
A/B/C/D
K
4508
T
2
UniProt
VAR_064826
N
4549
D
SACS_HUMAN
Disease (SACS)
---
A/B/C/D
N
4549
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HEPN (A:4451-4567,B:4451-4567,C:4451-456...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEPN
PS50910
HEPN domain profile.
SACS_HUMAN
4451-4567
4
A:4451-4567
B:4451-4567
C:4451-4567
D:4451-4567
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Exons
(1, 4)
Info
All Exons
Exon 1.11b (A:4439-4577 | B:4439-4577 | C:4442...)
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All Exon Boundaries
1: Boundary 1.10a/1.11b
2: Boundary 1.11b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000382292
2b
ENSE00001548892
chr13:
23985652-23985359
294
SACS_HUMAN
1-7
7
0
-
-
1.4
ENST00000382292
4
ENSE00001762476
chr13:
23949408-23949258
151
SACS_HUMAN
7-57
51
0
-
-
1.5
ENST00000382292
5
ENSE00001749661
chr13:
23945304-23945217
88
SACS_HUMAN
58-87
30
0
-
-
1.6a
ENST00000382292
6a
ENSE00001794623
chr13:
23942626-23942541
86
SACS_HUMAN
87-115
29
0
-
-
1.7
ENST00000382292
7
ENSE00001738413
chr13:
23939416-23939305
112
SACS_HUMAN
116-153
38
0
-
-
1.8
ENST00000382292
8
ENSE00001764306
chr13:
23932620-23932474
147
SACS_HUMAN
153-202
50
0
-
-
1.9a
ENST00000382292
9a
ENSE00001739205
chr13:
23930146-23928658
1489
SACS_HUMAN
202-698
497
0
-
-
1.10a
ENST00000382292
10a
ENSE00001745943
chr13:
23928015-23927924
92
SACS_HUMAN
698-729
32
0
-
-
1.11b
ENST00000382292
11b
ENSE00001731339
chr13:
23915829-23902965
12865
SACS_HUMAN
729-4579
3851
4
A:4439-4577
B:4439-4577
C:4442-4577
D:4440-4576
139
139
136
137
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HEPN_3o10D01 (D:4447-4574)
1b: PFAM_HEPN_3o10D02 (D:4447-4574)
1c: PFAM_HEPN_3o10D03 (D:4447-4574)
1d: PFAM_HEPN_3o10D04 (D:4447-4574)
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Clan
:
KNTase_C
(11)
Family
:
HEPN
(3)
Homo sapiens (Human)
(1)
1a
HEPN-3o10D01
D:4447-4574
1b
HEPN-3o10D02
D:4447-4574
1c
HEPN-3o10D03
D:4447-4574
1d
HEPN-3o10D04
D:4447-4574
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Asym.Unit (200 KB)
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