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3O0N
Asym. Unit
Info
Asym.Unit (436 KB)
Biol.Unit 1 (427 KB)
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(1)
Title
:
THERMOTOGA MARITIMA RIBONUCLEOTIDE REDUCTASE, NRDJ, IN COMPLEX WITH DTTP AND ADENOSYLCOBALAMIN
Authors
:
K. -M. Larsson, D. T. Logan, P. Nordlund
Date
:
19 Jul 10 (Deposition) - 28 Jul 10 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, 10 Alpha/Beta Barrel, Adenosylcobalamin Dependent, Ribonucleotide Reductase, Reduction Ribonucleotide 2'-Oh Position, Effector Dttp, Coenzyme B12
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. M. Larsson, D. T. Logan, P. Nordlund
Structural Basis For Adenosylcobalamin Activation In Adocbl-Dependent Ribonucleotide Reductases.
Acs Chem. Biol. V. 5 933 2010
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Hetero Components
(6, 8)
Info
All Hetero Components
1a: 5'-DEOXYADENOSINE (5ADa)
2a: COBALAMIN (B12a)
3a: CHLORIDE ION (CLa)
4a: COBALT (II) ION (COa)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
6b: THYMIDINE-5'-TRIPHOSPHATE (TTPb)
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No.
Name
Count
Type
Full Name
1
5AD
1
Ligand/Ion
5'-DEOXYADENOSINE
2
B12
1
Ligand/Ion
COBALAMIN
3
CL
1
Ligand/Ion
CHLORIDE ION
4
CO
1
Ligand/Ion
COBALT (II) ION
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
TTP
2
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:141 , SER A:142 , ILE A:143 , ARG A:171 , VAL A:177 , ALA A:178 , GLY A:179 , ALA A:184 , SER A:185 , PHE A:190 , HOH A:646 , HOH A:661 , HOH A:668 , HOH A:817 , HOH A:818 , HOH A:826 , MG A:1002 , LYS B:158 , VAL B:200 , VAL B:201 , LYS B:202
BINDING SITE FOR RESIDUE TTP A 1001
2
AC2
SOFTWARE
VAL A:607
BINDING SITE FOR RESIDUE CL A 1004
3
AC3
SOFTWARE
HOH A:665 , HOH A:668 , HOH A:817 , TTP A:1001
BINDING SITE FOR RESIDUE MG A 1002
4
AC4
SOFTWARE
HOH B:925 , HOH B:933 , HOH B:934 , HOH B:935 , TTP B:1001
BINDING SITE FOR RESIDUE MG B 1002
5
AC5
SOFTWARE
LYS A:158 , VAL A:200 , VAL A:201 , ASP B:141 , SER B:142 , ILE B:143 , ARG B:171 , VAL B:177 , ALA B:178 , GLY B:179 , ALA B:184 , SER B:185 , PHE B:190 , HOH B:679 , HOH B:731 , HOH B:925 , HOH B:934 , HOH B:946 , MG B:1002
BINDING SITE FOR RESIDUE TTP B 1001
6
AC6
SOFTWARE
ARG B:26 , ASN B:242 , GLY B:294 , ASP B:295 , CYS B:322 , GLY B:492 , SER B:502 , PHE B:508 , ARG B:514 , LYS B:547 , GLU B:551 , THR B:598 , ASN B:600 , THR B:626 , VAL B:627 , TYR B:628 , LEU B:633 , HOH B:674 , HOH B:756 , HOH B:953 , HOH B:954 , 5AD B:1004
BINDING SITE FOR RESIDUE B12 B 1003
7
AC7
SOFTWARE
MET B:212 , LEU B:243 , SER B:244 , CYS B:322 , GLY B:323 , SER B:596 , HOH B:735 , HOH B:760 , HOH B:937 , HOH B:942 , B12 B:1003
BINDING SITE FOR RESIDUE 5AD B 1004
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Asymmetric Unit 1
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