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Getting 'Exon' information from database.
3NZI
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
SUBSTRATE INDUCED REMODELING OF THE ACTIVE SITE REGULATES HTRA1 ACTIVITY
Authors
:
L. Truebestein, A. Tennstaedt, P. Hauske, T. Krojer, M. Kaiser, T. Clau M. Ehrmann
Date
:
16 Jul 10 (Deposition) - 23 Feb 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Serine Protease, Degp, Htra, Protease, Hydrolase-Peptide Inhibitor Complex, Hydrolase-Hydrolase Substrate Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Truebestein, A. Tennstaedt, T. Monig, T. Krojer, F. Canellas, M. Kaiser, T. Clausen, M. Ehrmann
Substrate-Induced Remodeling Of The Active Site Regulates Human Htra1 Activity.
Nat. Struct. Mol. Biol. V. 18 386 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: VALINE BORONIC ACID (B2Va)
View:
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Label:
No.
Name
Count
Type
Full Name
1
B2V
1
Mod. Amino Acid
VALINE BORONIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:220 , LEU A:309 , ASN A:324 , TYR A:325 , GLY A:326 , ASN A:327 , SER A:328 , THR A:344 , LEU A:345 , LYS A:346
BINDING SITE FOR CHAIN B OF CITRATE SYNTHASE
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063148 (A252T, chain A, )
2: VAR_063149 (V297M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063148
A
252
T
HTRA1_HUMAN
Disease (CARASIL)
113993968
A
A
252
T
2
UniProt
VAR_063149
V
297
M
HTRA1_HUMAN
Disease (CARASIL)
113993969
A
V
297
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:365-370)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
HTRA1_HUMAN
365-454
1
A:365-370
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (A:160-191)
Exon 1.3 (A:191-259)
Exon 1.4 (A:260-324)
Exon 1.5 (A:325-335)
Exon 1.6 (A:336-370)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000368984
1a
ENSE00001448527
chr10:
124221041-124221640
600
HTRA1_HUMAN
1-158
158
0
-
-
1.2
ENST00000368984
2
ENSE00001727698
chr10:
124248418-124248517
100
HTRA1_HUMAN
158-191
34
1
A:160-191
32
1.3
ENST00000368984
3
ENSE00001656483
chr10:
124248938-124249142
205
HTRA1_HUMAN
191-259
69
1
A:191-259
69
1.4
ENST00000368984
4
ENSE00001691312
chr10:
124266207-124266401
195
HTRA1_HUMAN
260-324
65
1
A:260-324
65
1.5
ENST00000368984
5
ENSE00001099158
chr10:
124266886-124266918
33
HTRA1_HUMAN
325-335
11
1
A:325-335
11
1.6
ENST00000368984
6
ENSE00001099160
chr10:
124268172-124268286
115
HTRA1_HUMAN
336-374
39
1
A:336-370
35
1.7
ENST00000368984
7
ENSE00001099153
chr10:
124269612-124269669
58
HTRA1_HUMAN
374-393
20
0
-
-
1.8
ENST00000368984
8
ENSE00001099157
chr10:
124271486-124271581
96
HTRA1_HUMAN
393-425
33
0
-
-
1.9b
ENST00000368984
9b
ENSE00001608082
chr10:
124273707-124274424
718
HTRA1_HUMAN
425-480
56
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_2_3nziA01 (A:204-342)
2a: PFAM_Citrate_synt_3nziB01 (B:4-8)
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Clans
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(
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Families
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)
(
)
Organisms
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)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin_2
(18)
Homo sapiens (Human)
(4)
1a
Trypsin_2-3nziA01
A:204-342
Clan
:
no clan defined [family: Citrate_synt]
(9)
Family
:
Citrate_synt
(9)
Mus musculus (Mouse)
(1)
2a
Citrate_synt-3nziB01
B:4-8
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Asymmetric Unit 1
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