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3NZ1
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF KEMP ELIMINATION CATALYST 1A53-2 COMPLEXED WITH TRANSITION STATE ANALOG 5-NITRO BENZOTRIAZOLE
Authors
:
T. M. Lee, H. K. Privett, J. T. Kaiser, S. L. Mayo
Date
:
15 Jul 10 (Deposition) - 29 Jun 11 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.56
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tim Barrel, Kemp Elimination Enzyme, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. K. Privett, G. Kiss, T. M. Lee, R. Blomberg, R. A. Chica, L. M. Thomas, D. Hilvert, K. N. Houk, S. L. Mayo
Iterative Approach To Computational Enzyme Design.
Proc. Natl. Acad. Sci. Usa V. 109 3790 2012
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 5-NITRO-1H-BENZOTRIAZOLE (3NYa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
3a: L(+)-TARTARIC ACID (TLAa)
3b: L(+)-TARTARIC ACID (TLAb)
3c: L(+)-TARTARIC ACID (TLAc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3NY
1
Ligand/Ion
5-NITRO-1H-BENZOTRIAZOLE
2
SO4
6
Ligand/Ion
SULFATE ION
3
TLA
3
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:51 , LYS A:53 , ALA A:81 , ALA A:83 , TRP A:110 , GLU A:178 , TRP A:210 , GLN A:211 , SO4 A:267
BINDING SITE FOR RESIDUE 3NY A 262
02
AC2
SOFTWARE
ARG A:3 , TYR A:4 , ARG A:97
BINDING SITE FOR RESIDUE SO4 A 263
03
AC3
SOFTWARE
ARG A:36 , GLU A:39 , LYS A:42 , ARG A:43
BINDING SITE FOR RESIDUE SO4 A 264
04
AC4
SOFTWARE
LYS A:53 , TRP A:210 , GLN A:211 , GLY A:212 , GLY A:233 , SER A:234 , SO4 A:267 , HOH A:325 , HOH A:357 , HOH A:363 , HOH A:384
BINDING SITE FOR RESIDUE SO4 A 265
05
AC5
SOFTWARE
LYS A:10 , ARG A:18 , LYS A:71
BINDING SITE FOR RESIDUE SO4 A 266
06
AC6
SOFTWARE
LYS A:53 , SER A:56 , SER A:58 , PHE A:89 , GLN A:211 , 3NY A:262 , SO4 A:265 , HOH A:363 , HOH A:414 , HOH A:431
BINDING SITE FOR RESIDUE SO4 A 267
07
AC7
SOFTWARE
SER A:21 , ARG A:23 , ARG A:64 , ASP A:65 , GLU A:68 , HOH A:293 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 268
08
AC8
SOFTWARE
PHE A:40 , ILE A:45 , ARG A:75 , ILE A:247
BINDING SITE FOR RESIDUE TLA A 269
09
AC9
SOFTWARE
TYR A:148 , SER A:151 , TYR A:152
BINDING SITE FOR RESIDUE TLA A 270
10
BC1
SOFTWARE
TRP A:8 , LEU A:187 , ASN A:204 , HOH A:324 , HOH A:333 , HOH A:397
BINDING SITE FOR RESIDUE TLA A 271
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IGPS (A:48-62)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IGPS
PS00614
Indole-3-glycerol phosphate synthase signature.
TRPC_SULSO
48-62
1
A:48-62
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nz1a_ (A:)
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Classes
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)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Tryptophan biosynthesis enzymes
(108)
Protein domain
:
automated matches
(30)
Sulfolobus solfataricus [TaxId: 2287]
(6)
1a
d3nz1a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_IGPS_3nz1A01 (A:2-247)
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Clans
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Organisms
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)
(
)
Clan
:
TIM_barrel
(694)
Family
:
IGPS
(10)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(6)
1a
IGPS-3nz1A01
A:2-247
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Chain A
Asymmetric Unit 1
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Asym.Unit (57 KB)
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