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3NXK
Biol. Unit 2
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Asym.Unit (833 KB)
Biol.Unit 1 (422 KB)
Biol.Unit 2 (408 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROBABLE CYTOPLASMIC L-ASPARAGINASE FROM CAMPYLOBACTER JEJUNI
Authors
:
Y. Kim, M. Makowska-Grzyska, N. Maltseva, L. Papazisi, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
14 Jul 10 (Deposition) - 04 Aug 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta-Alpha Sandwich, Cytoplasmic L- Asparaginase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Makowska-Grzyska, N. Maltseva, L. Papazisi, W. F. Anderson A. Joachimiak
Crystal Structure Of Probable Cytoplasmic L-Asparaginase From Campylobacter Jejuni
To Be Published
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Hetero Components
(4, 32)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
GOL
3
Ligand/Ion
GLYCEROL
3
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC3 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
THR A:318 , SER A:319 , LYS F:213
BINDING SITE FOR RESIDUE ACY A 343
02
BC9
SOFTWARE
GLY E:15 , THR E:16 , ASP E:62 , SER E:63 , GLY E:94 , THR E:95 , ASP E:96
BINDING SITE FOR RESIDUE SO4 E 341
03
CC1
SOFTWARE
SER E:111 , ASP E:112 , LYS E:205
BINDING SITE FOR RESIDUE SO4 E 342
04
CC2
SOFTWARE
ILE E:256 , LYS E:258 , LYS E:261 , LYS E:265 , ASN H:65
BINDING SITE FOR RESIDUE GOL E 343
05
CC3
SOFTWARE
LYS E:236 , LYS E:270
BINDING SITE FOR RESIDUE GOL E 344
06
CC4
SOFTWARE
ARG E:122 , SER E:128 , ASP E:130 , ASN E:157 , VAL E:174 , HOH E:1028 , ARG F:122 , SER F:128 , ALA F:129 , HOH F:406
BINDING SITE FOR RESIDUE GOL E 332
07
CC5
SOFTWARE
GLY F:15 , THR F:16 , SER F:63 , GLY F:94 , THR F:95 , ASP F:96 , HOH F:973
BINDING SITE FOR RESIDUE SO4 F 341
08
CC6
SOFTWARE
SER F:111 , ASP F:112 , LYS F:113 , LYS F:205
BINDING SITE FOR RESIDUE SO4 F 342
09
CC7
SOFTWARE
LYS A:213 , THR F:318 , SER F:319
BINDING SITE FOR RESIDUE ACY F 343
10
CC8
SOFTWARE
GLY G:15 , THR G:16 , SER G:63 , GLY G:94 , THR G:95 , ASP G:96 , HOH G:872
BINDING SITE FOR RESIDUE SO4 G 341
11
CC9
SOFTWARE
SER G:111 , ASP G:112 , LYS G:113
BINDING SITE FOR RESIDUE SO4 G 342
12
DC1
SOFTWARE
GLY H:15 , THR H:16 , ASP H:62 , SER H:63 , GLY H:94 , THR H:95 , ASP H:96
BINDING SITE FOR RESIDUE SO4 H 341
13
DC2
SOFTWARE
SER H:111 , ASP H:112 , LYS H:113 , LYS H:205
BINDING SITE FOR RESIDUE SO4 H 342
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Asparaginase_3nxkH01 (H:7-325)
1b: PFAM_Asparaginase_3nxkH02 (H:7-325)
1c: PFAM_Asparaginase_3nxkH03 (H:7-325)
1d: PFAM_Asparaginase_3nxkH04 (H:7-325)
1e: PFAM_Asparaginase_3nxkH05 (H:7-325)
1f: PFAM_Asparaginase_3nxkH06 (H:7-325)
1g: PFAM_Asparaginase_3nxkH07 (H:7-325)
1h: PFAM_Asparaginase_3nxkH08 (H:7-325)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Asparaginase]
(13)
Family
:
Asparaginase
(13)
Campylobacter jejuni
(1)
1a
Asparaginase-3nxkH01
H:7-325
1b
Asparaginase-3nxkH02
H:7-325
1c
Asparaginase-3nxkH03
H:7-325
1d
Asparaginase-3nxkH04
H:7-325
1e
Asparaginase-3nxkH05
H:7-325
1f
Asparaginase-3nxkH06
H:7-325
1g
Asparaginase-3nxkH07
H:7-325
1h
Asparaginase-3nxkH08
H:7-325
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Asymmetric Unit 1
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