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3NWN
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN KIF9 MOTOR DOMAIN IN COMPLEX WITH ADP
Authors
:
H. Zhu, W. Tempel, H. He, Y. Shen, J. Wang, G. Brothers, R. Landry, C. H. Ar A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Struct Genomics Consortium (Sgc)
Date
:
09 Jul 10 (Deposition) - 21 Jul 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Kinesin, Motor Domain, Adp, Structural Genomics, Structural Genomics Consortium, Sgc, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, W. Tempel, H. He, Y. Shen, J. Wang, G. Brothers, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp
To Be Published
[
close entry info
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
UNX
8
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:100 , HOH A:342 , HOH A:343 , HOH A:344 , HOH A:346 , ADP A:401
BINDING SITE FOR RESIDUE MG A 402
2
AC2
SOFTWARE
SER A:65 , GLN A:66 , HIS A:112 , HOH A:415
BINDING SITE FOR RESIDUE CL A 341
3
AC3
SOFTWARE
ARG A:12 , LYS A:14 , PRO A:15 , GLN A:94 , THR A:95 , GLY A:96 , ALA A:97 , GLY A:98 , LYS A:99 , THR A:100 , TYR A:101 , HOH A:342 , HOH A:343 , HOH A:346 , HOH A:347 , HOH A:355 , MG A:402
BINDING SITE FOR RESIDUE ADP A 401
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022139 (V78I, chain A, )
2: VAR_020443 (G96A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022139
V
78
I
KIF9_HUMAN
Polymorphism
2270569
A
V
78
I
2
UniProt
VAR_020443
G
96
A
KIF9_HUMAN
Polymorphism
3733092
A
G
96
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:6-340)
2: KINESIN_MOTOR_1 (A:239-250)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF9_HUMAN
6-340
1
A:6-340
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF9_HUMAN
239-250
1
A:239-250
[
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]
Exons
(9, 9)
Info
All Exons
Exon 1.4b (A:5-31)
Exon 1.5a (A:32-87)
Exon 1.6 (A:87-122)
Exon 1.7 (A:123-197)
Exon 1.8 (A:198-225)
Exon 1.9b (A:226-250 (gaps))
Exon 1.10b (A:267-306 (gaps))
Exon 1.11a (A:306-327)
Exon 1.12 (A:328-340)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2b/1.4b
02: Boundary 1.4b/1.5a
03: Boundary 1.5a/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.10b
08: Boundary 1.10b/1.11a
09: Boundary 1.11a/1.12
10: Boundary 1.12/1.13b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000335044
2b
ENSE00001672395
chr3:
47324337-47323985
353
KIF9_HUMAN
-
0
0
-
-
1.4b
ENST00000335044
4b
ENSE00002170013
chr3:
47318869-47318772
98
KIF9_HUMAN
1-31
31
1
A:5-31
27
1.5a
ENST00000335044
5a
ENSE00001792729
chr3:
47316980-47316815
166
KIF9_HUMAN
32-87
56
1
A:32-87
56
1.6
ENST00000335044
6
ENSE00001080805
chr3:
47315148-47315042
107
KIF9_HUMAN
87-122
36
1
A:87-122
36
1.7
ENST00000335044
7
ENSE00001080802
chr3:
47312951-47312727
225
KIF9_HUMAN
123-197
75
1
A:123-197
75
1.8
ENST00000335044
8
ENSE00001080801
chr3:
47308753-47308670
84
KIF9_HUMAN
198-225
28
1
A:198-225
28
1.9b
ENST00000335044
9b
ENSE00001080803
chr3:
47308558-47308466
93
KIF9_HUMAN
226-256
31
1
A:226-250 (gaps)
25
1.10b
ENST00000335044
10b
ENSE00001080789
chr3:
47307367-47307220
148
KIF9_HUMAN
257-306
50
1
A:267-306 (gaps)
40
1.11a
ENST00000335044
11a
ENSE00001080799
chr3:
47305840-47305776
65
KIF9_HUMAN
306-327
22
1
A:306-327
22
1.12
ENST00000335044
12
ENSE00001767172
chr3:
47299050-47298973
78
KIF9_HUMAN
328-353
26
1
A:328-340
13
1.13b
ENST00000335044
13b
ENSE00001080795
chr3:
47289576-47289508
69
KIF9_HUMAN
354-376
23
0
-
-
1.14
ENST00000335044
14
ENSE00001756108
chr3:
47288967-47288863
105
KIF9_HUMAN
377-411
35
0
-
-
1.15
ENST00000335044
15
ENSE00001685861
chr3:
47287742-47287687
56
KIF9_HUMAN
412-430
19
0
-
-
1.16
ENST00000335044
16
ENSE00001080793
chr3:
47287001-47286911
91
KIF9_HUMAN
430-460
31
0
-
-
1.17
ENST00000335044
17
ENSE00001080797
chr3:
47286414-47286281
134
KIF9_HUMAN
461-505
45
0
-
-
1.18
ENST00000335044
18
ENSE00001080792
chr3:
47284735-47284541
195
KIF9_HUMAN
505-570
66
0
-
-
1.19
ENST00000335044
19
ENSE00001080791
chr3:
47282505-47282291
215
KIF9_HUMAN
570-642
73
0
-
-
1.21a
ENST00000335044
21a
ENSE00001080808
chr3:
47278109-47277933
177
KIF9_HUMAN
642-701
60
0
-
-
1.22
ENST00000335044
22
ENSE00001734314
chr3:
47277639-47277524
116
KIF9_HUMAN
701-739
39
0
-
-
1.23
ENST00000335044
23
ENSE00001804907
chr3:
47277107-47277003
105
KIF9_HUMAN
740-774
35
0
-
-
1.24e
ENST00000335044
24e
ENSE00001593057
chr3:
47270192-47269516
677
KIF9_HUMAN
775-790
16
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nwna_ (A:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d3nwna_
A:
[
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CATH Domains
(0, 0 ; only for superseded entry 2NR8: 1,1)
Info
all CATH domains
1a: CATH_2nr8A00 ()
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Kinesin_3nwnA01 (A:12-340)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Kinesin
(42)
Homo sapiens (Human)
(23)
1a
Kinesin-3nwnA01
A:12-340
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