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3NWK
Asym. Unit
Info
Asym.Unit (321 KB)
Biol.Unit 1 (310 KB)
Biol.Unit 2 (313 KB)
Biol.Unit 3 (157 KB)
Biol.Unit 4 (158 KB)
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(1)
Title
:
A SECOND C2221 FORM OF CONCANAVALIN A (CANAVALIA ENSIFORMIS)
Authors
:
L. M. Foroughi, Y. N. Kang, A. J. Matzger
Date
:
09 Jul 10 (Deposition) - 13 Jul 11 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (2x)
Biol. Unit 2: B,D (2x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: B,D (1x)
Keywords
:
Lectin, Sugar Binding Protein, Glycoprotein, Manganese, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Foroughi, Y. N. Kang, A. J. Matzger
Polymer-Induced Heteronucleation For Protein Single Crystal Growth: Structural Elucidation Of Bovine Liver Catalase And Concanavalin A Forms
Cryst. Growth Des. V. 11 1294 2011
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GOL
11
Ligand/Ion
GLYCEROL
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:265 , HOH A:302
BINDING SITE FOR RESIDUE CA A 238
02
AC2
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:304 , HOH A:444
BINDING SITE FOR RESIDUE MN A 239
03
AC3
SOFTWARE
TYR A:12 , ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , ARG A:228 , HIS C:205
BINDING SITE FOR RESIDUE GOL A 240
04
AC4
SOFTWARE
SER A:113 , HIS A:180 , HOH A:271 , HOH A:321 , ASP C:139
BINDING SITE FOR RESIDUE GOL A 241
05
AC5
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:244 , HOH B:270
BINDING SITE FOR RESIDUE CA B 238
06
AC6
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:298 , HOH B:377
BINDING SITE FOR RESIDUE MN B 239
07
AC7
SOFTWARE
TYR B:12 , ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , ARG B:228 , HOH B:387
BINDING SITE FOR RESIDUE GOL B 240
08
AC8
SOFTWARE
SER B:113 , HIS B:180 , HOH B:325 , ASP D:139 , HOH D:289
BINDING SITE FOR RESIDUE GOL B 241
09
AC9
SOFTWARE
ASN B:44 , SER B:201 , ASP B:203 , HOH B:445 , PRO D:13 , ASN D:14 , THR D:15 , ASP D:16 , HOH D:253
BINDING SITE FOR RESIDUE GOL B 242
10
BC1
SOFTWARE
ILE B:221 , SER B:223 , GLY B:224 , HOH B:317
BINDING SITE FOR RESIDUE GOL B 243
11
BC2
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:274 , HOH C:290
BINDING SITE FOR RESIDUE CA C 238
12
BC3
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:299 , HOH C:301
BINDING SITE FOR RESIDUE MN C 239
13
BC4
SOFTWARE
PRO A:13 , ASN A:14 , THR A:15 , ASP A:16 , HOH A:297 , ASN C:44 , SER C:201 , ASP C:203 , SER C:204 , HOH C:286 , HOH C:303
BINDING SITE FOR RESIDUE GOL C 240
14
BC5
SOFTWARE
ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , ARG C:228
BINDING SITE FOR RESIDUE GOL C 241
15
BC6
SOFTWARE
ASP A:139 , SER C:113 , HIS C:180 , HOH C:411 , HOH C:412
BINDING SITE FOR RESIDUE GOL C 242
16
BC7
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:287 , HOH D:442
BINDING SITE FOR RESIDUE CA D 238
17
BC8
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:242 , HOH D:426
BINDING SITE FOR RESIDUE MN D 239
18
BC9
SOFTWARE
TYR D:12 , ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , ARG D:228 , HOH D:279
BINDING SITE FOR RESIDUE GOL D 240
19
CC1
SOFTWARE
ASP B:139 , HOH B:319 , SER D:113 , HIS D:180 , HOH D:320
BINDING SITE FOR RESIDUE GOL D 241
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3nwka_ (A:)
1b: SCOP_d3nwkb_ (B:)
1c: SCOP_d3nwkc_ (C:)
1d: SCOP_d3nwkd_ (D:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d3nwka_
A:
1b
d3nwkb_
B:
1c
d3nwkc_
C:
1d
d3nwkd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (321 KB)
Header - Asym.Unit
Biol.Unit 1 (310 KB)
Header - Biol.Unit 1
Biol.Unit 2 (313 KB)
Header - Biol.Unit 2
Biol.Unit 3 (157 KB)
Header - Biol.Unit 3
Biol.Unit 4 (158 KB)
Header - Biol.Unit 4
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