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Asym. Unit
Info
Asym.Unit (421 KB)
Biol.Unit 1 (413 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE XANTHINE OXIDASE IN COMPLEX WITH ARSENITE
Authors
:
H. Cao, R. Hille
Date
:
08 Jul 10 (Deposition) - 19 Jan 11 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,J,K,L
Biol. Unit 1: A,B,C,J,K,L (1x)
Keywords
:
Hydroxylase, Homodimer, Xanthine Oxidase, Arsenite, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Cao, J. Hall, R. Hille
X-Ray Crystal Structure Of Arsenite-Inhibited Xanthine Oxidase: Mu-Sulfido, Mu-Oxo Double Bridge Between Molybdenum And Arsenic In The Active Site.
J. Am. Chem. Soc. V. 133 12414 2011
[
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ARSENITE (ASTa)
1b: ARSENITE (ASTb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
4a: DIOXOTHIOMOLYBDENUM(VI) ION (MOSa)
4b: DIOXOTHIOMOLYBDENUM(VI) ION (MOSb)
5a: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEa)
5b: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AST
2
Ligand/Ion
ARSENITE
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
MOS
2
Ligand/Ion
DIOXOTHIOMOLYBDENUM(VI) ION
5
MTE
2
Ligand/Ion
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:112 , CYS A:113 , GLY A:114 , CYS A:116 , CYS A:148 , ARG A:149 , CYS A:150
BINDING SITE FOR RESIDUE FES A 601
02
AC2
SOFTWARE
GLY A:42 , CYS A:43 , GLY A:44 , GLY A:46 , GLY A:47 , CYS A:48 , GLY A:49 , CYS A:51 , ASN A:71 , CYS A:73
BINDING SITE FOR RESIDUE FES A 602
03
AC3
SOFTWARE
GLY A:46 , LYS B:256 , LEU B:257 , VAL B:258 , VAL B:259 , GLY B:260 , ASN B:261 , THR B:262 , GLU B:263 , ILE B:264 , ALA B:301 , PHE B:337 , ALA B:338 , ALA B:346 , SER B:347 , GLY B:350 , ASN B:351 , ILE B:353 , THR B:354 , SER B:359 , ASP B:360 , ILE B:403 , LEU B:404 , HOH B:540 , HOH B:546 , HOH B:559 , HOH B:672 , HOH B:1281 , HOH B:1345
BINDING SITE FOR RESIDUE FAD B 606
04
AC4
SOFTWARE
GLN A:112 , CYS A:150 , HOH C:247 , GLY C:796 , GLY C:797 , PHE C:798 , ARG C:912 , MET C:1038 , GLY C:1039 , GLN C:1040 , ALA C:1079 , SER C:1080 , VAL C:1081 , SER C:1082 , GLN C:1194 , MOS C:1327
BINDING SITE FOR RESIDUE MTE C 1326
05
AC5
SOFTWARE
AST C:1 , GLN C:767 , GLY C:799 , PHE C:911 , ARG C:912 , ALA C:1078 , ALA C:1079 , GLU C:1261 , MTE C:1326
BINDING SITE FOR RESIDUE MOS C 1327
06
AC6
SOFTWARE
HOH C:306 , GLU C:802 , PHE C:914 , ALA C:1078 , ALA C:1079 , GLU C:1261 , MOS C:1327
BINDING SITE FOR RESIDUE AST C 1
07
AC7
SOFTWARE
GLN J:112 , CYS J:113 , GLY J:114 , CYS J:116 , CYS J:148 , ARG J:149 , CYS J:150 , LEU L:744
BINDING SITE FOR RESIDUE FES J 601
08
AC8
SOFTWARE
GLY J:42 , CYS J:43 , GLY J:44 , GLY J:46 , GLY J:47 , CYS J:48 , GLY J:49 , CYS J:51 , CYS J:73
BINDING SITE FOR RESIDUE FES J 602
09
AC9
SOFTWARE
GLY J:46 , LEU K:257 , VAL K:258 , VAL K:259 , GLY K:260 , ASN K:261 , THR K:262 , GLU K:263 , ILE K:264 , ALA K:301 , PHE K:337 , ALA K:338 , ALA K:346 , SER K:347 , GLY K:350 , ASN K:351 , ILE K:353 , THR K:354 , SER K:359 , ASP K:360 , ILE K:403 , LEU K:404 , HOH K:541 , HOH K:719 , HOH K:1176 , HOH K:1514
BINDING SITE FOR RESIDUE FAD K 606
10
BC1
SOFTWARE
GLU L:802 , PHE L:914 , ALA L:1079 , GLU L:1261 , MOS L:1327 , HOH L:1499
BINDING SITE FOR RESIDUE AST L 1
11
BC2
SOFTWARE
GLN J:112 , CYS J:150 , HOH L:154 , GLY L:796 , GLY L:797 , PHE L:798 , GLY L:799 , ARG L:912 , MET L:1038 , GLY L:1039 , GLN L:1040 , ALA L:1079 , SER L:1080 , VAL L:1081 , SER L:1082 , GLN L:1194 , MOS L:1327 , HOH L:1340 , HOH L:1408
BINDING SITE FOR RESIDUE MTE L 1326
12
BC3
SOFTWARE
AST L:1 , GLN L:767 , GLY L:799 , PHE L:911 , ARG L:912 , ALA L:1078 , ALA L:1079 , GLU L:1261 , MTE L:1326
BINDING SITE FOR RESIDUE MOS L 1327
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (A:4-91,J:4-91)
2: 2FE2S_FER_1 (A:43-51,J:43-51)
3: FAD_PCMH (B:229-414,K:229-414)
4: MOLYBDOPTERIN_EUK (C:797-832,L:797-832)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
XDH_BOVIN
4-91
2
A:4-91
J:4-91
2
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
XDH_BOVIN
43-51
2
A:43-51
J:43-51
3
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
XDH_BOVIN
229-414
2
B:229-414
K:229-414
4
MOLYBDOPTERIN_EUK
PS00559
Eukaryotic molybdopterin oxidoreductases signature.
XDH_BOVIN
797-832
2
C:797-832
L:797-832
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 12)
Info
All SCOP Domains
1a: SCOP_d3nvva2 (A:93-165)
1b: SCOP_d3nvvj2 (J:93-165)
2a: SCOP_d3nvvc1 (C:571-694)
2b: SCOP_d3nvvl1 (L:571-694)
3a: SCOP_d3nvva1 (A:2-92)
3b: SCOP_d3nvvj1 (J:2-92)
4a: SCOP_d3nvvb2 (B:415-528)
4b: SCOP_d3nvvk2 (K:415-528)
5a: SCOP_d3nvvb1 (B:195-414)
5b: SCOP_d3nvvk1 (K:224-414)
6a: SCOP_d3nvvc2 (C:695-1325)
6b: SCOP_d3nvvl2 (L:695-1315)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CO dehydrogenase ISP C-domain like
(45)
Superfamily
:
CO dehydrogenase ISP C-domain like
(45)
Family
:
CO dehydrogenase ISP C-domain like
(42)
Protein domain
:
automated matches
(9)
Cow (Bos taurus) [TaxId: 9913]
(9)
1a
d3nvva2
A:93-165
1b
d3nvvj2
J:93-165
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
CO dehydrogenase molybdoprotein N-domain-like
(44)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Cow (Bos taurus) [TaxId: 9913]
(9)
2a
d3nvvc1
C:571-694
2b
d3nvvl1
L:571-694
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(9)
3a
d3nvva1
A:2-92
3b
d3nvvj1
J:2-92
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
CO dehydrogenase flavoprotein C-terminal domain-like
(35)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Cow (Bos taurus) [TaxId: 9913]
(10)
4a
d3nvvb2
B:415-528
4b
d3nvvk2
K:415-528
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
CO dehydrogenase flavoprotein N-terminal domain-like
(33)
Protein domain
:
automated matches
(10)
Cow (Bos taurus) [TaxId: 9913]
(10)
5a
d3nvvb1
B:195-414
5b
d3nvvk1
K:224-414
Fold
:
Molybdenum cofactor-binding domain
(44)
Superfamily
:
Molybdenum cofactor-binding domain
(44)
Family
:
Molybdenum cofactor-binding domain
(44)
Protein domain
:
automated matches
(10)
Cow (Bos taurus) [TaxId: 9913]
(9)
6a
d3nvvc2
C:695-1325
6b
d3nvvl2
L:695-1315
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(6, 12)
Info
all PFAM domains
1a: PFAM_FAD_binding_5_3nvvK01 (K:232-412)
1b: PFAM_FAD_binding_5_3nvvK02 (K:232-412)
2a: PFAM_Fer2_3nvvJ01 (J:8-78)
2b: PFAM_Fer2_3nvvJ02 (J:8-78)
3a: PFAM_Fer2_2_3nvvJ03 (J:87-162)
3b: PFAM_Fer2_2_3nvvJ04 (J:87-162)
4a: PFAM_Ald_Xan_dh_C2_3nvvL01 (L:701-1236)
4b: PFAM_Ald_Xan_dh_C2_3nvvL02 (L:701-1236)
5a: PFAM_Ald_Xan_dh_C_3nvvL03 (L:587-693)
5b: PFAM_Ald_Xan_dh_C_3nvvL04 (L:587-693)
6a: PFAM_CO_deh_flav_C_3nvvK03 (K:419-523)
6b: PFAM_CO_deh_flav_C_3nvvK04 (K:419-523)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_PCMH
(53)
Family
:
FAD_binding_5
(22)
Bos taurus (Bovine)
(7)
1a
FAD_binding_5-3nvvK01
K:232-412
1b
FAD_binding_5-3nvvK02
K:232-412
Clan
:
Fer2
(69)
Family
:
Fer2
(60)
Bos taurus (Bovine)
(10)
2a
Fer2-3nvvJ01
J:8-78
2b
Fer2-3nvvJ02
J:8-78
Family
:
Fer2_2
(24)
Bos taurus (Bovine)
(7)
3a
Fer2_2-3nvvJ03
J:87-162
3b
Fer2_2-3nvvJ04
J:87-162
Clan
:
no clan defined [family: Ald_Xan_dh_C2]
(24)
Family
:
Ald_Xan_dh_C2
(24)
Bos taurus (Bovine)
(7)
4a
Ald_Xan_dh_C2-3nvvL01
L:701-1236
4b
Ald_Xan_dh_C2-3nvvL02
L:701-1236
Clan
:
no clan defined [family: Ald_Xan_dh_C]
(24)
Family
:
Ald_Xan_dh_C
(24)
Bos taurus (Bovine)
(7)
5a
Ald_Xan_dh_C-3nvvL03
L:587-693
5b
Ald_Xan_dh_C-3nvvL04
L:587-693
Clan
:
no clan defined [family: CO_deh_flav_C]
(22)
Family
:
CO_deh_flav_C
(22)
Bos taurus (Bovine)
(7)
6a
CO_deh_flav_C-3nvvK03
K:419-523
6b
CO_deh_flav_C-3nvvK04
K:419-523
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Asym.Unit (421 KB)
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