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3NV9
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENTAMOEBA HISTOLYTICA MALIC ENZYME
Authors
:
D. Dutta, A. Chakrabarty, S. K. Ghosh, A. K. Das
Date
:
08 Jul 10 (Deposition) - 20 Jul 11 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chakrabarty, D. Dutta, A. K. Das, S. K. Ghosh
Structural And Functional Characterization Of Entamoeba Histolytica Malic Enzyme
To Be Published
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
NA
2
Ligand/Ion
SODIUM ION
4
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:183 , LYS A:377 , THR A:379 , ASP A:380 , HOH A:635
BINDING SITE FOR RESIDUE SO4 A 488
02
AC2
SOFTWARE
GLN A:30 , LYS A:33 , THR A:434 , HOH A:689 , ARG B:71 , HOH B:503
BINDING SITE FOR RESIDUE SO4 A 489
03
AC3
SOFTWARE
ARG A:453 , GLN A:457 , HOH A:746
BINDING SITE FOR RESIDUE SO4 A 490
04
AC4
SOFTWARE
SER A:20 , GLN A:21 , HOH A:671
BINDING SITE FOR RESIDUE SO4 A 491
05
AC5
SOFTWARE
GLY A:226 , ALA A:227 , ASP A:252 , SER A:253 , HOH A:741
BINDING SITE FOR RESIDUE SO4 A 492
06
AC6
SOFTWARE
LYS A:5 , ALA A:6 , HOH A:688
BINDING SITE FOR RESIDUE SO4 A 493
07
AC7
SOFTWARE
ARG A:376 , ARG A:432
BINDING SITE FOR RESIDUE SO4 A 494
08
AC8
SOFTWARE
THR A:348 , ARG A:350 , PHE A:353 , PRO A:354 , ASN A:355 , GLN A:356
BINDING SITE FOR RESIDUE NA A 495
09
AC9
SOFTWARE
SER A:287 , ILE A:288 , ALA A:289 , LYS A:310 , GLU A:312 , TRP A:313 , LYS A:396 , HOH A:818 , HOH A:819
BINDING SITE FOR RESIDUE GOL A 496
10
BC1
SOFTWARE
ARG A:101 , ILE A:170 , GLN A:172 , GLY A:228 , SER A:229 , THR A:303 , HOH A:564
BINDING SITE FOR RESIDUE GOL A 498
11
BC2
SOFTWARE
PRO A:148 , LYS A:177 , ARG A:269 , ALA B:289
BINDING SITE FOR RESIDUE GOL A 499
12
BC3
SOFTWARE
LEU A:103 , VAL A:116 , LYS A:120 , ASP A:169 , ASN A:358 , ASN A:359 , HOH A:518 , TYR B:65 , THR B:66
BINDING SITE FOR RESIDUE GOL A 497
13
BC4
SOFTWARE
ARG A:157 , ASN B:141 , LYS B:142 , GLU B:143
BINDING SITE FOR RESIDUE GOL B 500
14
BC5
SOFTWARE
ASP A:81 , ARG A:89 , ASP A:187 , ARG A:374
BINDING SITE FOR RESIDUE ACT A 502
15
BC6
SOFTWARE
ARG B:183 , THR B:379 , ASP B:380
BINDING SITE FOR RESIDUE SO4 B 488
16
BC7
SOFTWARE
ALA B:227 , ASP B:252 , SER B:253 , GOL B:498 , HOH B:681
BINDING SITE FOR RESIDUE SO4 B 489
17
BC8
SOFTWARE
SER B:20 , GLN B:21 , HOH B:682
BINDING SITE FOR RESIDUE SO4 B 490
18
BC9
SOFTWARE
GLN B:30 , LYS B:33 , HOH B:650
BINDING SITE FOR RESIDUE SO4 B 491
19
CC1
SOFTWARE
PRO B:411 , ARG B:453 , HOH B:717
BINDING SITE FOR RESIDUE SO4 B 492
20
CC2
SOFTWARE
LYS B:5 , PHE B:393 , ASP B:409 , GLU B:410 , PRO B:411 , GLY B:412 , HOH B:611 , HOH B:720
BINDING SITE FOR RESIDUE SO4 B 493
21
CC3
SOFTWARE
ASN B:75 , ASN B:79 , PHE B:85 , TYR B:86
BINDING SITE FOR RESIDUE SO4 B 494
22
CC4
SOFTWARE
ASN A:141 , LYS A:142 , GLU A:143 , HOH A:754 , LYS B:315
BINDING SITE FOR RESIDUE SO4 B 495
23
CC5
SOFTWARE
THR B:348 , ARG B:350 , PHE B:353 , PRO B:354 , ASN B:355 , GLN B:356
BINDING SITE FOR RESIDUE NA B 496
24
CC6
SOFTWARE
GLN B:172 , TYR B:176 , ALA B:227 , ARG B:269 , PHE B:270 , TYR B:271 , ARG B:272 , LYS B:273
BINDING SITE FOR RESIDUE GOL B 497
25
CC7
SOFTWARE
ARG B:101 , GLN B:172 , GLY B:228 , SER B:229 , SO4 B:489 , HOH B:808 , HOH B:809
BINDING SITE FOR RESIDUE GOL B 498
26
CC8
SOFTWARE
ASP B:81 , ASP B:187
BINDING SITE FOR RESIDUE ACT B 499
27
CC9
SOFTWARE
ASN B:91 , LYS B:368 , ASP B:448
BINDING SITE FOR RESIDUE ACT B 501
28
DC1
SOFTWARE
TYR A:65 , THR A:66 , LEU B:103 , VAL B:116 , LYS B:120 , ASP B:169 , ASN B:358 , HOH B:773
BINDING SITE FOR RESIDUE GOL B 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (171 KB)
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Header - Biol.Unit 1
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