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3NV4
Asym. Unit
Info
Asym.Unit (31 KB)
Biol.Unit 1 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 C-TERMINAL CRD IN COMPLEX WITH SIALYLLACTOSE
Authors
:
H. Yoshida, S. Kamitori
Date
:
07 Jul 10 (Deposition) - 22 Sep 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sugar Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yoshida, M. Teraoka, N. Nishi, S. Nakakita, T. Nakamura, M. Hirashima, S. Kamitori
X-Ray Structures Of Human Galectin-9 C-Terminal Domain In Complexes With A Biantennary Oligosaccharide And Sialyllactose
J. Biol. Chem. V. 285 36969 2010
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: BETA-D-GALACTOSE (GALa)
3a: NICKEL (II) ION (NIa)
4a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
NI
1
Ligand/Ion
NICKEL (II) ION
4
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:12 , HIS A:320
BINDING SITE FOR RESIDUE NI A 401
2
AC2
SOFTWARE
HOH A:1 , ARG A:221 , TRP A:255 , GAL A:501
BINDING SITE FOR RESIDUE SIA A 500
3
AC3
SOFTWARE
HOH A:3 , ARG A:221 , HIS A:235 , ASN A:237 , ARG A:239 , ASN A:248 , TRP A:255 , GLU A:258 , SIA A:500 , BGC A:502
BINDING SITE FOR RESIDUE GAL A 501
4
AC4
SOFTWARE
HOH A:3 , HOH A:5 , HOH A:8 , ARG A:239 , GLU A:258 , ARG A:260 , GAL A:501
BINDING SITE FOR RESIDUE BGC A 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (-|A:195-323)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG9_HUMAN
17-148
227-355
1
-
A:195-323
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Exons
(4, 4)
Info
All Exons
Exon 1.8 (A:188-191)
Exon 1.9a (A:192-221)
Exon 1.9c (A:221-275)
Exon 1.10f (A:276-323)
View:
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All Exon Boundaries
1: Boundary 1.7d/1.8
2: Boundary 1.8/1.9a
3: Boundary 1.9a/1.9c
4: Boundary 1.9c/1.10f
5: Boundary 1.10f/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000395473
1a
ENSE00002165006
chr17:
25956824-25958330
1507
LEG9_HUMAN
1-13
13
0
-
-
1.2
ENST00000395473
2
ENSE00001721697
chr17:
25965289-25965380
92
LEG9_HUMAN
14-44
31
0
-
-
1.3a
ENST00000395473
3a
ENSE00001630948
chr17:
25967598-25967799
202
LEG9_HUMAN
44-111
68
0
-
-
1.5
ENST00000395473
5
ENSE00001709088
chr17:
25969264-25969374
111
LEG9_HUMAN
112-148
37
0
-
-
1.6
ENST00000395473
6
ENSE00001727464
chr17:
25970551-25970646
96
LEG9_HUMAN
149-180
32
0
-
-
1.7c
ENST00000395473
7c
ENSE00001611626
chr17:
25972340-25972375
36
LEG9_HUMAN
181-192
12
0
-
-
1.7d
ENST00000395473
7d
ENSE00001697897
chr17:
25972887-25972937
51
LEG9_HUMAN
193-209
17
0
-
-
1.8
ENST00000395473
8
ENSE00001698891
chr17:
25973573-25973614
42
LEG9_HUMAN
210-223
14
1
A:188-191
4
1.9a
ENST00000395473
9a
ENSE00001597519
chr17:
25974056-25974144
89
LEG9_HUMAN
224-253
30
1
A:192-221
30
1.9c
ENST00000395473
9c
ENSE00001271333
chr17:
25974296-25974458
163
LEG9_HUMAN
253-307
55
1
A:221-275
55
1.10f
ENST00000395473
10f
ENSE00001859656
chr17:
25975862-25976586
725
LEG9_HUMAN
308-355
48
1
A:276-323
48
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nv4a_ (A:)
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3nv4a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (31 KB)
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