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Asym. Unit
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Asym.Unit (130 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AND MUTATIONAL ANALYSIS OF THE NXF2/NXT1 HETERODIMERIC COMPLEX FROM CAENORHABDITIS ELEGANS AT 1.84 A RESOLUTION
Authors
:
D. E. Kerkow, A. B. Carmel, J. R. Williamson
Date
:
07 Jul 10 (Deposition) - 20 Jul 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ntf2-Like Domain, Beta Sheet Heterodimer Interface, Nucleoporin Binding Pocket, Water Mediated Interface, Cation-Pi Interactions, Pi-Pi Interactions, Nxf-Loop, Ntf2-Plug, Intramonomer Buried Waters, Novel Surface Exposed Pockets, Mrna Transport, Nucleus, Rna-Binding, Rna Binding-Protein Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Kerkow, A. B. Carmel, E. Menichelli, G. Ambrus, R. D. Hills, L. Gerace, J. R. Williamson
The Structure Of The Nxf2/Nxt1 Heterodimeric Complex Reveal The Combined Specificity And Versatility Of The Ntf2-Like Fold.
J. Mol. Biol. V. 415 649 2012
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
3o: SODIUM ION (NAo)
3p: SODIUM ION (NAp)
3q: SODIUM ION (NAq)
3r: SODIUM ION (NAr)
3s: SODIUM ION (NAs)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
NA
19
Ligand/Ion
SODIUM ION
4
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:294 , ILE A:296 , HIS A:298 , ILE B:9 , GLU B:12 , ASP B:13 , HOH B:503
BINDING SITE FOR RESIDUE PEG A 1001
02
AC2
SOFTWARE
LEU A:215 , ARG A:277 , TYR A:287 , ARG A:292 , ARG A:295 , GLU A:370 , GLY A:371 , NA A:456 , HOH A:553
BINDING SITE FOR RESIDUE PEG A 1002
03
AC3
SOFTWARE
ASP A:268 , GLU A:270 , GLY A:343 , PRO A:344 , ILE A:347 , HOH A:625
BINDING SITE FOR RESIDUE EDO A 1003
04
AC4
SOFTWARE
ASP A:228 , THR A:235 , HOH A:555 , HOH A:586 , HOH A:665
BINDING SITE FOR RESIDUE NA A 450
05
AC5
SOFTWARE
ASP A:259 , ILE A:261 , SER A:386 , ARG A:388 , HOH A:507
BINDING SITE FOR RESIDUE NA A 451
06
AC6
SOFTWARE
TYR A:358 , TYR A:393 , HOH A:564 , TYR B:135 , VAL B:136
BINDING SITE FOR RESIDUE NA A 452
07
AC7
SOFTWARE
GLN A:238
BINDING SITE FOR RESIDUE NA A 453
08
AC8
SOFTWARE
SER A:294 , ARG A:295 , HOH A:552 , HOH A:654
BINDING SITE FOR RESIDUE NA A 454
09
AC9
SOFTWARE
ASP A:228 , HIS A:315 , HOH A:633 , HOH A:634
BINDING SITE FOR RESIDUE NA A 455
10
BC1
SOFTWARE
ARG A:292 , ALA A:293 , ARG A:295 , GLU A:370 , PEG A:1002
BINDING SITE FOR RESIDUE NA A 456
11
BC2
SOFTWARE
TYR A:206 , PRO B:54 , ASN B:56
BINDING SITE FOR RESIDUE NA A 457
12
BC3
SOFTWARE
GLN A:238 , LEU A:240 , ASP A:241 , HOH A:669 , GLY B:86
BINDING SITE FOR RESIDUE NA A 458
13
BC4
SOFTWARE
GLU A:270 , ARG A:273 , MET A:274 , ARG A:277
BINDING SITE FOR RESIDUE NA A 459
14
BC5
SOFTWARE
ARG A:341 , ASP A:342 , SER A:345 , HIS A:355 , ASN A:357 , HOH A:582
BINDING SITE FOR RESIDUE NA A 460
15
BC6
SOFTWARE
GLU A:286 , HOH A:670 , GLU B:14 , CYS B:17 , ASN B:18
BINDING SITE FOR RESIDUE BME B 1001
16
BC7
SOFTWARE
PRO B:54 , ILE B:55 , ASN B:56 , SER B:60 , HOH B:546
BINDING SITE FOR RESIDUE PEG B 1002
17
BC8
SOFTWARE
ARG B:35 , MET B:65 , LYS B:66 , LEU B:68 , PRO B:69 , SER B:70 , HOH B:506 , HOH B:553 , HOH B:573
BINDING SITE FOR RESIDUE PEG B 1003
18
BC9
SOFTWARE
THR A:330 , HOH A:652 , VAL B:87 , THR B:88 , MET B:91 , HOH B:579 , HOH B:580 , HOH B:584
BINDING SITE FOR RESIDUE PEG B 1004
19
CC1
SOFTWARE
LYS A:262 , PHE A:263 , HOH A:612 , ASP B:108 , HOH B:517
BINDING SITE FOR RESIDUE NA B 450
20
CC2
SOFTWARE
PHE B:40 , LYS B:125 , LYS B:127 , HOH B:575
BINDING SITE FOR RESIDUE NA B 451
21
CC3
SOFTWARE
THR A:253 , LEU A:380 , ASP B:79 , ASN B:98
BINDING SITE FOR RESIDUE NA B 452
22
CC4
SOFTWARE
ASP B:25 , HOH B:531 , HOH B:605
BINDING SITE FOR RESIDUE NA B 453
23
CC5
SOFTWARE
GLN B:44 , VAL B:45 , SER B:46 , GLY B:57 , TYR B:58 , HOH B:501
BINDING SITE FOR RESIDUE NA B 454
24
CC6
SOFTWARE
PRO A:349 , HOH A:677 , ARG B:82 , GLY B:93 , TYR B:126 , HOH B:572
BINDING SITE FOR RESIDUE NA B 455
25
CC7
SOFTWARE
ASP B:90 , MET B:91 , LYS B:129 , HOH B:584
BINDING SITE FOR RESIDUE NA B 456
26
CC8
SOFTWARE
ASP B:90 , GLU B:122 , HOH B:542 , HOH B:554
BINDING SITE FOR RESIDUE NA B 457
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NTF2_DOMAIN (B:19-135,A:215-382)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTF2_DOMAIN
PS50177
Nuclear transport factor 2 domain profile.
NXT1_CAEEL
19-135
1
B:19-135
NXF2_CAEEL
231-398
1
A:215-382
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nv0b_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Nematode (Caenorhabditis elegans) [TaxId: 6239]
(2)
1a
d3nv0b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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