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3NUS
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
PHOSPHOINOSITIDE-DEPENDENT KINASE-1 (PDK1) WITH FRAGMENT8
Authors
:
N. Campobasso, P. Ward
Date
:
07 Jul 10 (Deposition) - 25 May 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Kinase Domain, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. R. Medina, C. W. Blackledge, D. A. Heerding, N. Campobasso, P. Ward, J. Briand, L. Wright, J. M. Axten
Aminoindazole Pdk1 Inhibitors: A Case Study In Fragment-Based Drug Discovery
Acs Med. Chem. Lett. V. 1 439 2010
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 1H-INDAZOL-3-AMINE (JNZa)
3a: PHOSPHOSERINE (SEPa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
JNZ
1
Ligand/Ion
1H-INDAZOL-3-AMINE
3
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SO4 A:3 , GLU A:107 , TYR A:146 , SER A:160 , TYR A:161
BINDING SITE FOR RESIDUE GOL A 359
2
AC2
SOFTWARE
PHE A:82 , PHE A:84 , GLU A:194 , LYS A:337
BINDING SITE FOR RESIDUE GOL A 360
3
AC3
SOFTWARE
LYS A:154 , TYR A:156 , GLU A:331
BINDING SITE FOR RESIDUE GOL A 363
4
AC4
SOFTWARE
ALA A:103 , THR A:104 , SER A:105 , HIS A:139 , SER A:191 , TRP A:347 , GLU A:348 , ASN A:349 , LEU A:350 , HIS A:351
BINDING SITE FOR RESIDUE GOL A 365
5
AC5
SOFTWARE
ALA A:109 , SER A:160 , TYR A:161 , ALA A:162 , LEU A:212
BINDING SITE FOR RESIDUE JNZ A 374
6
AC6
SOFTWARE
LYS A:76 , ARG A:131 , THR A:148 , PHE A:149 , GLN A:150
BINDING SITE FOR RESIDUE SO4 A 2
7
AC7
SOFTWARE
ARG A:106 , PRO A:140 , HIS A:351 , GOL A:359 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 3
8
AC8
SOFTWARE
GLY A:91 , SER A:92 , PHE A:93 , SER A:94
BINDING SITE FOR RESIDUE SO4 A 4
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:88-111)
2: PROTEIN_KINASE_ST (A:201-213)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PDPK1_HUMAN
88-111
1
A:88-111
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PDPK1_HUMAN
201-213
1
A:201-213
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nusa_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
3-phosphoinositide dependent protein kinase-1 Pdk1
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3nusa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_3nusA01 (A:82-341)
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Clans
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)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3nusA01
A:82-341
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Chain A
Asymmetric Unit 1
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Asym.Unit (53 KB)
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