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3NUN
Biol. Unit 1
Info
Asym.Unit (56 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
PHOSPHOINOSITIDE-DEPENDENT KINASE-1 (PDK1) WITH LEAD COMPOUND
Authors
:
N. Campobasso, P. Ward
Date
:
07 Jul 10 (Deposition) - 22 Jun 11 (Release) - 22 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Kinase Domain, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. R. Medina, C. W. Blackledge, D. A. Heerding, N. Campobasso, P. Ward, J. Briand, L. Wright, J. M. Axten
Aminoindazole Pdk1 Inhibitors: A Case Study In Fragment-Based Drug Discovery
To Be Published
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 6-(2-AMINOPYRIMIDIN-4-YL)-1H-INDAZ... (JMZa)
3a: PHOSPHOSERINE (SEPa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
JMZ
1
Ligand/Ion
6-(2-AMINOPYRIMIDIN-4-YL)-1H-INDAZOL-3-AMINE
3
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:53 , ARG A:106 , GLU A:107 , SER A:160 , TYR A:161 , SO4 A:370 , SO4 A:371
BINDING SITE FOR RESIDUE GOL A 359
02
AC2
SOFTWARE
HOH A:21 , PHE A:82 , LYS A:83 , PHE A:84 , GLU A:194 , LYS A:337
BINDING SITE FOR RESIDUE GOL A 360
03
AC3
SOFTWARE
LYS A:154 , TYR A:156 , GLU A:331 , GLY A:332
BINDING SITE FOR RESIDUE GOL A 363
04
AC4
SOFTWARE
HOH A:8 , ALA A:103 , THR A:104 , SER A:105 , HIS A:139 , SER A:191 , TRP A:347 , GLU A:348 , ASN A:349 , LEU A:350 , HIS A:351
BINDING SITE FOR RESIDUE GOL A 365
05
AC5
SOFTWARE
LYS A:83 , THR A:346 , TRP A:347 , GLU A:348
BINDING SITE FOR RESIDUE SO4 A 366
06
AC6
SOFTWARE
HOH A:64 , ARG A:75 , ARG A:136 , LYS A:199
BINDING SITE FOR RESIDUE SO4 A 368
07
AC7
SOFTWARE
ARG A:131 , THR A:148 , PHE A:149 , GLN A:150
BINDING SITE FOR RESIDUE SO4 A 369
08
AC8
SOFTWARE
ARG A:106 , HIS A:351 , GOL A:359
BINDING SITE FOR RESIDUE SO4 A 370
09
AC9
SOFTWARE
TYR A:146 , SER A:160 , GLN A:220 , GOL A:359
BINDING SITE FOR RESIDUE SO4 A 371
10
BC1
SOFTWARE
HOH A:58 , GLY A:91 , SER A:92 , PHE A:93 , SER A:94
BINDING SITE FOR RESIDUE SO4 A 1
11
BC2
SOFTWARE
VAL A:96 , ALA A:109 , LYS A:111 , GLU A:130 , LEU A:159 , SER A:160 , TYR A:161 , ALA A:162 , LEU A:212 , THR A:222 , ASP A:223
BINDING SITE FOR RESIDUE JMZ A 361
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:88-111)
2: PROTEIN_KINASE_ST (A:201-213)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PDPK1_HUMAN
88-111
1
A:88-111
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PDPK1_HUMAN
201-213
1
A:201-213
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3nuna_ (A:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
3-phosphoinositide dependent protein kinase-1 Pdk1
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3nuna_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_3nunA01 (A:82-341)
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Clans
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(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3nunA01
A:82-341
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Chain A
Asymmetric Unit 1
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Asym.Unit (56 KB)
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