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3NUJ
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 PROTEASE MUTANT I54V WITH ANTIVIRAL DRUG AMPRENAVIR
Authors
:
C. H. Shen, I. T. Weber
Date
:
07 Jul 10 (Deposition) - 25 Aug 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Enzyme Inhibition, Aspartic Protease, Hiv/Aids, Conformational Change, Amprenavir, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Shen, Y. F. Wang, A. Y. Kovalevsky, R. W. Harrison, I. T. Weber
Amprenavir Complexes With Hiv-1 Protease And Its Drug-Resistant Mutants Altering Hydrophobic Clusters.
Febs J. V. 277 3699 2010
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: {3-[(4-AMINO-BENZENESULFONYL)-ISOB... (478a)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
478
1
Ligand/Ion
{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YLESTER
2
IOD
19
Ligand/Ion
IODIDE ION
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:25 , GLY A:27 , ALA A:28 , ASP A:30 , VAL A:32 , GLY A:48 , GLY A:49 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:1075 , LEU B:23 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , VAL B:32 , GLY B:48 , GLY B:49 , ILE B:50 , HOH B:1063
BINDING SITE FOR RESIDUE 478 B 401
02
AC2
SOFTWARE
TRP B:6 , IOD B:501
BINDING SITE FOR RESIDUE IOD B 500
03
AC3
SOFTWARE
HOH A:1007 , IOD B:500
BINDING SITE FOR RESIDUE IOD B 501
04
AC4
SOFTWARE
THR A:74 , ASN A:88
BINDING SITE FOR RESIDUE IOD A 502
05
AC5
SOFTWARE
THR B:12
BINDING SITE FOR RESIDUE IOD B 504
06
AC6
SOFTWARE
THR B:74 , ASN B:88
BINDING SITE FOR RESIDUE IOD B 505
07
AC7
SOFTWARE
LYS A:55 , IOD A:508 , IOD A:519 , LYS B:70
BINDING SITE FOR RESIDUE IOD A 507
08
AC8
SOFTWARE
LYS A:55 , IOD A:507 , LYS B:70
BINDING SITE FOR RESIDUE IOD A 508
09
AC9
SOFTWARE
IOD B:510
BINDING SITE FOR RESIDUE IOD B 509
10
BC1
SOFTWARE
GLN A:61 , IOD B:509
BINDING SITE FOR RESIDUE IOD B 510
11
BC2
SOFTWARE
THR A:12
BINDING SITE FOR RESIDUE IOD A 511
12
BC3
SOFTWARE
GLY B:40
BINDING SITE FOR RESIDUE IOD B 512
13
BC4
SOFTWARE
THR A:12 , GLU A:65 , GLY A:68
BINDING SITE FOR RESIDUE IOD A 513
14
BC5
SOFTWARE
LYS B:14 , GLY B:17
BINDING SITE FOR RESIDUE IOD B 514
15
BC6
SOFTWARE
THR B:12 , GLU B:65 , GLY B:68 , HOH B:1094
BINDING SITE FOR RESIDUE IOD B 515
16
BC7
SOFTWARE
ARG B:8
BINDING SITE FOR RESIDUE IOD B 516
17
BC8
SOFTWARE
THR A:4
BINDING SITE FOR RESIDUE IOD A 517
18
BC9
SOFTWARE
ILE B:63 , HOH B:1054
BINDING SITE FOR RESIDUE IOD B 518
19
CC1
SOFTWARE
LYS A:55 , IOD A:507
BINDING SITE FOR RESIDUE IOD A 519
20
CC2
SOFTWARE
TRP A:6 , GLY A:51 , PRO B:79
BINDING SITE FOR RESIDUE IOD A 520
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:20-89)
2: ASP_PROTEASE (A:22-32,B:22-32)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:20-89
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-32
B:22-32
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3nuja_ (A:)
1b: SCOP_d3nujb_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d3nuja_
A:
1b
d3nujb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RVP_3nujB01 (B:4-98)
1b: PFAM_RVP_3nujB02 (B:4-98)
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Clan
:
Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
1a
RVP-3nujB01
B:4-98
1b
RVP-3nujB02
B:4-98
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (78 KB)
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