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3NUE
Biol. Unit 1
Info
Asym.Unit (257 KB)
Biol.Unit 1 (496 KB)
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(1)
Title
:
THE STRUCTURE OF 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH TRYPTOPHAN
Authors
:
E. J. Parker, G. B. Jameson, W. Jiao, C. J. Webby, E. N. Baker, H. M. Baker
Date
:
06 Jul 10 (Deposition) - 28 Jul 10 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Mycobacterium Tuberculosis, Dah7P Synthase, Shikimate Pathway, Aromatic Biosynthesis, Evolutionary Relationships, Transferase, Trp- Bound, Augmented Tim-Barrel Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Webby, W. Jiao, R. D. Hutton, N. J. Blackmore, H. M. Baker, E. N. Baker, G. B. Jameson, E. J. Parker
Synergistic Allostery, A Sophisticated Regulatory Network For The Control Of Aromatic Amino Acid Biosynthesis In Mycobacterium Tuberculosis
J. Biol. Chem. V. 285 30567 2010
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Hetero Components
(5, 32)
Info
All Hetero Components
1a: O-DODECANYL OCTAETHYLENE GLYCOL (CE1a)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
7a: TRYPTOPHAN (TRPa)
7b: TRYPTOPHAN (TRPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CE1
2
Ligand/Ion
O-DODECANYL OCTAETHYLENE GLYCOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
14
Ligand/Ion
GLYCEROL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
PO4
4
Ligand/Ion
PHOSPHATE ION
6
SO4
8
Ligand/Ion
SULFATE ION
7
TRP
4
Mod. Amino Acid
TRYPTOPHAN
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:87 , HIS A:369 , GLU A:411 , ASP A:441
BINDING SITE FOR RESIDUE MN A 463
02
AC2
SOFTWARE
VAL A:111 , LYS A:123 , ALA A:192 , CYS A:231 , ASN A:237 , THR A:240 , HOH A:2697 , HOH A:2698 , HOH A:2699 , HOH A:9043
BINDING SITE FOR RESIDUE TRP A 9004
03
AC3
SOFTWARE
GLY A:282 , GLU A:283 , LYS A:306 , ARG A:337 , HIS A:369 , HOH A:9020 , HOH A:9022 , HOH A:9318
BINDING SITE FOR RESIDUE PO4 A 464
04
AC4
SOFTWARE
MET A:92 , ARG A:168 , ARG A:171 , HOH A:2665 , HOH A:9216 , PRO B:8
BINDING SITE FOR RESIDUE SO4 A 465
05
AC5
SOFTWARE
ARG A:135 , SER A:136 , ALA A:137 , ARG A:284
BINDING SITE FOR RESIDUE SO4 A 466
06
AC6
SOFTWARE
GLN A:70 , VAL A:121 , GLU A:242 , HOH A:2696 , HOH A:2697 , HOH A:2699 , HOH A:9030
BINDING SITE FOR RESIDUE GOL A 2647
07
AC7
SOFTWARE
GLU A:63 , THR A:187 , ILE A:243 , HOH A:2662
BINDING SITE FOR RESIDUE GOL A 467
08
AC8
SOFTWARE
MET A:92 , VAL A:170 , ARG A:171 , ASN A:175 , ASN B:175
BINDING SITE FOR RESIDUE CE1 A 1001
09
AC9
SOFTWARE
GLY B:282 , GLU B:283 , LYS B:306 , ARG B:337 , HIS B:369 , HOH B:9036 , HOH B:9205
BINDING SITE FOR RESIDUE PO4 B 463
10
BC1
SOFTWARE
ARG B:135 , SER B:136 , ALA B:137 , ARG B:284
BINDING SITE FOR RESIDUE SO4 B 464
11
BC2
SOFTWARE
ARG B:23 , LEU B:26 , ARG B:49 , ARG B:256 , GOL B:470 , HOH B:2662 , HOH B:9288 , HOH B:9326
BINDING SITE FOR RESIDUE SO4 B 465
12
BC3
SOFTWARE
CYS B:87 , HIS B:369 , GLU B:411 , ASP B:441
BINDING SITE FOR RESIDUE MN B 466
13
BC4
SOFTWARE
LYS B:123 , ALA B:192 , LEU B:194 , CYS B:231 , ASN B:237 , LEU B:238 , THR B:240 , ALA B:241 , HOH B:2667 , HOH B:2671 , HOH B:9095 , HOH B:9240
BINDING SITE FOR RESIDUE TRP B 9004
14
BC5
SOFTWARE
GLN B:70 , VAL B:121 , VAL B:122 , GLU B:242 , HOH B:2667 , HOH B:2671 , HOH B:2683 , HOH B:9111
BINDING SITE FOR RESIDUE GOL B 2647
15
BC6
SOFTWARE
ARG B:25 , GLN B:270 , HIS B:326 , HOH B:2666 , HOH B:9039
BINDING SITE FOR RESIDUE GOL B 467
16
BC7
SOFTWARE
THR A:24 , ASP A:27 , HOH A:9017 , ARG B:25 , VAL B:298 , HOH B:2652
BINDING SITE FOR RESIDUE GOL B 468
17
BC8
SOFTWARE
PRO B:17 , LEU B:18 , ARG B:23 , HOH B:9030 , HOH B:9073
BINDING SITE FOR RESIDUE CL B 469
18
BC9
SOFTWARE
LEU B:15 , PRO B:16 , LEU B:18 , ARG B:23 , ARG B:260 , LEU B:261 , SO4 B:465
BINDING SITE FOR RESIDUE GOL B 470
19
CC1
SOFTWARE
THR B:187 , ILE B:243 , HIS B:277 , HOH B:9056
BINDING SITE FOR RESIDUE GOL B 471
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3nuea_ (A:)
1b: SCOP_d3nueb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class-II DAHP synthetase
(13)
Protein domain
:
Probable DAHP synthetase AroG, phenylalanine-repressible
(5)
Mycobacterium tuberculosis [TaxId: 1773]
(5)
1a
d3nuea_
A:
1b
d3nueb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Site
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (257 KB)
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