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3NUE
Asym. Unit
Info
Asym.Unit (257 KB)
Biol.Unit 1 (496 KB)
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(1)
Title
:
THE STRUCTURE OF 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH TRYPTOPHAN
Authors
:
E. J. Parker, G. B. Jameson, W. Jiao, C. J. Webby, E. N. Baker, H. M. Baker
Date
:
06 Jul 10 (Deposition) - 28 Jul 10 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Mycobacterium Tuberculosis, Dah7P Synthase, Shikimate Pathway, Aromatic Biosynthesis, Evolutionary Relationships, Transferase, Trp- Bound, Augmented Tim-Barrel Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Webby, W. Jiao, R. D. Hutton, N. J. Blackmore, H. M. Baker, E. N. Baker, G. B. Jameson, E. J. Parker
Synergistic Allostery, A Sophisticated Regulatory Network For The Control Of Aromatic Amino Acid Biosynthesis In Mycobacterium Tuberculosis
J. Biol. Chem. V. 285 30567 2010
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: O-DODECANYL OCTAETHYLENE GLYCOL (CE1a)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
7a: TRYPTOPHAN (TRPa)
7b: TRYPTOPHAN (TRPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CE1
1
Ligand/Ion
O-DODECANYL OCTAETHYLENE GLYCOL
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
7
Ligand/Ion
GLYCEROL
4
MN
2
Ligand/Ion
MANGANESE (II) ION
5
PO4
2
Ligand/Ion
PHOSPHATE ION
6
SO4
4
Ligand/Ion
SULFATE ION
7
TRP
2
Mod. Amino Acid
TRYPTOPHAN
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:87 , HIS A:369 , GLU A:411 , ASP A:441
BINDING SITE FOR RESIDUE MN A 463
02
AC2
SOFTWARE
VAL A:111 , LYS A:123 , ALA A:192 , CYS A:231 , ASN A:237 , THR A:240 , HOH A:2697 , HOH A:2698 , HOH A:2699 , HOH A:9043
BINDING SITE FOR RESIDUE TRP A 9004
03
AC3
SOFTWARE
GLY A:282 , GLU A:283 , LYS A:306 , ARG A:337 , HIS A:369 , HOH A:9020 , HOH A:9022 , HOH A:9318
BINDING SITE FOR RESIDUE PO4 A 464
04
AC4
SOFTWARE
MET A:92 , ARG A:168 , ARG A:171 , HOH A:2665 , HOH A:9216 , PRO B:8
BINDING SITE FOR RESIDUE SO4 A 465
05
AC5
SOFTWARE
ARG A:135 , SER A:136 , ALA A:137 , ARG A:284
BINDING SITE FOR RESIDUE SO4 A 466
06
AC6
SOFTWARE
GLN A:70 , VAL A:121 , GLU A:242 , HOH A:2696 , HOH A:2697 , HOH A:2699 , HOH A:9030
BINDING SITE FOR RESIDUE GOL A 2647
07
AC7
SOFTWARE
GLU A:63 , THR A:187 , ILE A:243 , HOH A:2662
BINDING SITE FOR RESIDUE GOL A 467
08
AC8
SOFTWARE
MET A:92 , VAL A:170 , ARG A:171 , ASN A:175 , ASN B:175
BINDING SITE FOR RESIDUE CE1 A 1001
09
AC9
SOFTWARE
GLY B:282 , GLU B:283 , LYS B:306 , ARG B:337 , HIS B:369 , HOH B:9036 , HOH B:9205
BINDING SITE FOR RESIDUE PO4 B 463
10
BC1
SOFTWARE
ARG B:135 , SER B:136 , ALA B:137 , ARG B:284
BINDING SITE FOR RESIDUE SO4 B 464
11
BC2
SOFTWARE
ARG B:23 , LEU B:26 , ARG B:49 , ARG B:256 , GOL B:470 , HOH B:2662 , HOH B:9288 , HOH B:9326
BINDING SITE FOR RESIDUE SO4 B 465
12
BC3
SOFTWARE
CYS B:87 , HIS B:369 , GLU B:411 , ASP B:441
BINDING SITE FOR RESIDUE MN B 466
13
BC4
SOFTWARE
LYS B:123 , ALA B:192 , LEU B:194 , CYS B:231 , ASN B:237 , LEU B:238 , THR B:240 , ALA B:241 , HOH B:2667 , HOH B:2671 , HOH B:9095 , HOH B:9240
BINDING SITE FOR RESIDUE TRP B 9004
14
BC5
SOFTWARE
GLN B:70 , VAL B:121 , VAL B:122 , GLU B:242 , HOH B:2667 , HOH B:2671 , HOH B:2683 , HOH B:9111
BINDING SITE FOR RESIDUE GOL B 2647
15
BC6
SOFTWARE
ARG B:25 , GLN B:270 , HIS B:326 , HOH B:2666 , HOH B:9039
BINDING SITE FOR RESIDUE GOL B 467
16
BC7
SOFTWARE
THR A:24 , ASP A:27 , HOH A:9017 , ARG B:25 , VAL B:298 , HOH B:2652
BINDING SITE FOR RESIDUE GOL B 468
17
BC8
SOFTWARE
PRO B:17 , LEU B:18 , ARG B:23 , HOH B:9030 , HOH B:9073
BINDING SITE FOR RESIDUE CL B 469
18
BC9
SOFTWARE
LEU B:15 , PRO B:16 , LEU B:18 , ARG B:23 , ARG B:260 , LEU B:261 , SO4 B:465
BINDING SITE FOR RESIDUE GOL B 470
19
CC1
SOFTWARE
THR B:187 , ILE B:243 , HIS B:277 , HOH B:9056
BINDING SITE FOR RESIDUE GOL B 471
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3nuea_ (A:)
1b: SCOP_d3nueb_ (B:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class-II DAHP synthetase
(13)
Protein domain
:
Probable DAHP synthetase AroG, phenylalanine-repressible
(5)
Mycobacterium tuberculosis [TaxId: 1773]
(5)
1a
d3nuea_
A:
1b
d3nueb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (257 KB)
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