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3NU5
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 PROTEASE MUTANT I50V WITH ANTIVIRAL DRUG AMPRENAVIR
Authors
:
Y. -F. Wang, C. H. Shen, I. T. Weber
Date
:
06 Jul 10 (Deposition) - 25 Aug 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.29
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Enzyme Inhibition, Aspartic Protease, Hiv/Aids, Conformational Change, Amprenavir, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Shen, Y. F. Wang, A. Y. Kovalevsky, R. W. Harrison, I. T. Weber
Amprenavir Complexes With Hiv-1 Protease And Its Drug-Resistant Mutants Altering Hydrophobic Clusters.
Febs J. V. 277 3699 2010
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: {3-[(4-AMINO-BENZENESULFONYL)-ISOB... (478a)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
478
1
Ligand/Ion
{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YLESTER
2
ACT
2
Ligand/Ion
ACETATE ION
3
CL
7
Ligand/Ion
CHLORIDE ION
4
NA
3
Ligand/Ion
SODIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:60 , HOH A:1013 , HOH A:1022 , HOH A:1066 , HOH A:1073 , HOH A:1085
BINDING SITE FOR RESIDUE NA A 501
02
AC2
SOFTWARE
THR A:74 , ASN A:88 , HOH A:1105 , ARG B:141
BINDING SITE FOR RESIDUE CL A 511
03
AC3
SOFTWARE
ILE A:54 , LYS A:55
BINDING SITE FOR RESIDUE CL A 517
04
AC4
SOFTWARE
GLN A:18 , MET A:36 , SER A:37 , HOH A:1033 , THR B:112 , GLU B:165 , ACT B:801
BINDING SITE FOR RESIDUE ACT A 802
05
AC5
SOFTWARE
ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , GLY A:48 , GLY A:49 , VAL A:50 , VAL A:82 , ILE A:84 , HOH A:1155 , LEU B:123 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , ASP B:130 , VAL B:132 , GLY B:148 , GLY B:149 , VAL B:150 , PRO B:181 , VAL B:182 , ILE B:184 , HOH B:1001
BINDING SITE FOR RESIDUE 478 B 401
06
AC6
SOFTWARE
ASP B:160 , HOH B:1023 , HOH B:1113 , HOH B:1177
BINDING SITE FOR RESIDUE NA B 502
07
AC7
SOFTWARE
HOH B:1157 , HOH B:1158 , HOH B:1159 , HOH B:1160 , HOH B:1161 , HOH B:1162
BINDING SITE FOR RESIDUE NA B 503
08
AC8
SOFTWARE
TRP B:106
BINDING SITE FOR RESIDUE CL B 512
09
AC9
SOFTWARE
THR B:174 , ASN B:188 , HOH B:1025
BINDING SITE FOR RESIDUE CL B 513
10
BC1
SOFTWARE
THR B:112 , HOH B:1174
BINDING SITE FOR RESIDUE CL B 514
11
BC2
SOFTWARE
LYS B:120 , GLU B:121
BINDING SITE FOR RESIDUE CL B 515
12
BC3
SOFTWARE
GLN B:118 , MET B:136 , SER B:137
BINDING SITE FOR RESIDUE CL B 516
13
BC4
SOFTWARE
ACT A:802 , THR B:112 , ILE B:113 , LYS B:114 , GLU B:165 , ILE B:166 , ALA B:167 , GLY B:168
BINDING SITE FOR RESIDUE ACT B 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:120-189)
2: ASP_PROTEASE (A:22-32,B:122-132)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:120-189
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-32
B:122-132
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3nu5a_ (A:)
1b: SCOP_d3nu5b_ (B:)
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Classes
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d3nu5a_
A:
1b
d3nu5b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RVP_3nu5B01 (B:104-198)
1b: PFAM_RVP_3nu5B02 (B:104-198)
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Clan
:
Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
1a
RVP-3nu5B01
B:104-198
1b
RVP-3nu5B02
B:104-198
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Asymmetric Unit 1
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