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3NTY
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AKR1C1 IN COMPLEX WITH NADP AND 5-PHENYL,3-CHLOROSALICYLIC ACID
Authors
:
U. Dhagat, O. El-Kabbani
Date
:
06 Jul 10 (Deposition) - 13 Apr 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aldo-Keto Reductase, 20 Alpha Hydroxysteroid Dehydrogenase, Akr1C1, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. El-Kabbani, U. Dhagat, M. Soda, S. Endo, T. Matsunaga, A. Hara
Probing The Inhibitor Selectivity Pocket Of Human 20 Alpha-Hydroxysteroid Dehydrogenase (Akr1C1) With X-Ray Crystallography And Site-Directed Mutagenesis
Bioorg. Med. Chem. Lett. V. 21 2564 2011
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 5-CHLORO-4-HYDROXYBIPHENYL-3-CARBO... (5P3a)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5P3
1
Ligand/Ion
5-CHLORO-4-HYDROXYBIPHENYL-3-CARBOXYLIC ACID
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:22 , THR A:23 , TYR A:24 , ASP A:50 , TYR A:55 , HIS A:117 , SER A:166 , ASN A:167 , GLN A:190 , TYR A:216 , SER A:217 , ALA A:218 , LEU A:219 , GLY A:220 , SER A:221 , HIS A:222 , LEU A:236 , ALA A:253 , LEU A:268 , ALA A:269 , LYS A:270 , SER A:271 , TYR A:272 , ARG A:276 , GLN A:279 , ASN A:280 , LEU A:306 , 5P3 A:350 , HOH A:383 , HOH A:443 , HOH A:450 , HOH A:484 , HOH A:590 , HOH A:617 , HOH A:658 , HOH A:667
BINDING SITE FOR RESIDUE NAP A 351
2
AC2
SOFTWARE
TYR A:24 , LEU A:54 , TYR A:55 , TRP A:86 , HIS A:117 , HIS A:222 , TRP A:227 , LEU A:308 , NAP A:351
BINDING SITE FOR RESIDUE 5P3 A 350
3
AC3
SOFTWARE
GLU A:133 , HIS A:248 , GLU A:292 , HOH A:333
BINDING SITE FOR RESIDUE ZN A 324
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048214 (R170H, chain A, )
2: VAR_048215 (Q172L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048214
R
170
H
AK1C1_HUMAN
Polymorphism
17295755
A
R
170
H
2
UniProt
VAR_048215
Q
172
L
AK1C1_HUMAN
Polymorphism
17354444
A
Q
172
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:45-62)
2: ALDOKETO_REDUCTASE_2 (A:151-168)
3: ALDOKETO_REDUCTASE_3 (A:268-283)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1C1_HUMAN
45-62
1
A:45-62
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1C1_HUMAN
151-168
1
A:151-168
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1C1_HUMAN
268-283
1
A:268-283
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Exons
(9, 9)
Info
All Exons
Exon 1.2b (A:6-28)
Exon 1.4b (A:29-84)
Exon 1.5a (A:85-123)
Exon 1.5d (A:124-149)
Exon 1.6 (A:150-190)
Exon 1.8 (A:191-227)
Exon 1.9b (A:227-282)
Exon 1.10 (A:283-310)
Exon 1.11c (A:310-323)
View:
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All Exon Boundaries
01: Boundary -/1.2b
02: Boundary 1.2b/1.4b
03: Boundary 1.4b/1.5a
04: Boundary 1.5a/1.5d
05: Boundary 1.5d/1.6
06: Boundary 1.6/1.8
07: Boundary 1.8/1.9b
08: Boundary 1.9b/1.10
09: Boundary 1.10/1.11c
10: Boundary 1.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000380872
2b
ENSE00002191078
chr10:
5005445-5005720
276
AK1C1_HUMAN
1-28
28
1
A:6-28
23
1.4b
ENST00000380872
4b
ENSE00001707745
chr10:
5008106-5008273
168
AK1C1_HUMAN
29-84
56
1
A:29-84
56
1.5a
ENST00000380872
5a
ENSE00001605320
chr10:
5009119-5009235
117
AK1C1_HUMAN
85-123
39
1
A:85-123
39
1.5d
ENST00000380872
5d
ENSE00001782597
chr10:
5010501-5010578
78
AK1C1_HUMAN
124-149
26
1
A:124-149
26
1.6
ENST00000380872
6
ENSE00001777306
chr10:
5011014-5011136
123
AK1C1_HUMAN
150-190
41
1
A:150-190
41
1.8
ENST00000380872
8
ENSE00001632630
chr10:
5014393-5014502
110
AK1C1_HUMAN
191-227
37
1
A:191-227
37
1.9b
ENST00000380872
9b
ENSE00001714957
chr10:
5014776-5014941
166
AK1C1_HUMAN
227-282
56
1
A:227-282
56
1.10
ENST00000380872
10
ENSE00001803180
chr10:
5018043-5018125
83
AK1C1_HUMAN
283-310
28
1
A:283-310
28
1.11c
ENST00000380872
11c
ENSE00001822803
chr10:
5019892-5022159
2268
AK1C1_HUMAN
310-323
14
1
A:310-323
14
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ntya_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d3ntya_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_3ntyA01 (A:18-301)
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Clans
(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Homo sapiens (Human)
(60)
1a
Aldo_ket_red-3ntyA01
A:18-301
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Chain A
Asymmetric Unit 1
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