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3NTB
Biol. Unit 2
Info
Asym.Unit (782 KB)
Biol.Unit 1 (390 KB)
Biol.Unit 2 (388 KB)
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(1)
Title
:
STRUCTURE OF 6-METHYLTHIO NAPROXEN ANALOG BOUND TO MCOX-2.
Authors
:
K. C. Duggan, J. Musee, M. J. Walters, J. M. Harp, J. R. Kiefer, J. A. Oates L. J. Marnett
Date
:
03 Jul 10 (Deposition) - 01 Sep 10 (Release) - 17 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Prostaglandin H2 Synthase, Cyclooxygeanse-2, Naproxen Analog, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Duggan, M. J. Walters, J. Musee, J. M. Harp, J. R. Kiefer, J. A. Oates, L. J. Marnett
Molecular Basis For Cyclooxygenase Inhibition By The Non-Steroidal Anti-Inflammatory Drug Naproxen.
J. Biol. Chem. V. 285 34950 2010
[
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4a: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Na)
4b: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nb)
4c: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nc)
4d: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
3
Ligand/Ion
B-OCTYLGLUCOSIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
T1N
2
Ligand/Ion
(2S)-2-[6-(METHYLSULFANYL)NAPHTHALEN-2-YL]PROPANOICACID
[
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Sites
(17, 17)
Info
All Sites
01: BC9 (SOFTWARE)
02: CC1 (SOFTWARE)
03: CC2 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC7 (SOFTWARE)
09: CC8 (SOFTWARE)
10: CC9 (SOFTWARE)
11: DC1 (SOFTWARE)
12: DC2 (SOFTWARE)
13: DC3 (SOFTWARE)
14: DC4 (SOFTWARE)
15: DC5 (SOFTWARE)
16: DC6 (SOFTWARE)
17: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC9
SOFTWARE
ALA C:199 , PHE C:200 , ALA C:202 , GLN C:203 , HIS C:207 , PHE C:210 , THR C:212 , HIS C:214 , VAL C:295 , ASN C:382 , TYR C:385 , HIS C:386 , HIS C:388 , LEU C:391 , LEU C:408 , ALA C:450 , HOH C:4061
BINDING SITE FOR RESIDUE HEM C 619
02
CC1
SOFTWARE
TYR C:55 , GLU C:67 , ASN C:68 , HOH C:4349
BINDING SITE FOR RESIDUE NAG C 661
03
CC2
SOFTWARE
ASN C:144 , TYR C:147 , ARG C:216 , NAG C:672 , HOH C:4085 , HOH C:4331 , HOH C:4974
BINDING SITE FOR RESIDUE NAG C 671
04
CC3
SOFTWARE
ARG C:216 , NAG C:671 , NAG C:673
BINDING SITE FOR RESIDUE NAG C 672
05
CC4
SOFTWARE
NAG C:672
BINDING SITE FOR RESIDUE NAG C 673
06
CC5
SOFTWARE
TYR C:402 , GLN C:406 , ASN C:410 , SER C:412 , ILE C:413 , HOH C:4055
BINDING SITE FOR RESIDUE NAG C 681
07
CC6
SOFTWARE
VAL C:116 , ARG C:120 , VAL C:349 , TYR C:355 , TYR C:385 , TRP C:387 , VAL C:523 , ALA C:527
BINDING SITE FOR RESIDUE T1N C 2
08
CC7
SOFTWARE
LYS C:83 , PRO C:84 , SER C:119 , ARG C:120
BINDING SITE FOR RESIDUE BOG C 5
09
CC8
SOFTWARE
ALA D:199 , PHE D:200 , ALA D:202 , GLN D:203 , HIS D:207 , PHE D:210 , LYS D:211 , THR D:212 , HIS D:214 , VAL D:295 , ASN D:382 , TYR D:385 , HIS D:386 , HIS D:388 , LEU D:391 , LEU D:408
BINDING SITE FOR RESIDUE HEM D 619
10
CC9
SOFTWARE
TYR D:55 , GLU D:67 , ASN D:68 , HOH D:654 , HOH D:689
BINDING SITE FOR RESIDUE NAG D 661
11
DC1
SOFTWARE
LEU C:238 , GLU D:140 , ASN D:144 , TYR D:147 , ARG D:216 , HOH D:640 , NAG D:672 , HOH D:4013 , HOH D:4295
BINDING SITE FOR RESIDUE NAG D 671
12
DC2
SOFTWARE
ARG D:216 , NAG D:671 , NAG D:673
BINDING SITE FOR RESIDUE NAG D 672
13
DC3
SOFTWARE
NAG D:672
BINDING SITE FOR RESIDUE NAG D 673
14
DC4
SOFTWARE
GLN D:406 , ASN D:410 , SER D:412 , ILE D:413 , GLU D:416 , HOH D:670 , HOH D:688 , HOH D:4821
BINDING SITE FOR RESIDUE NAG D 681
15
DC5
SOFTWARE
GLU C:179 , LYS C:180 , ARG C:184 , ARG C:185 , ARG C:438 , GLU C:486 , GLU C:490 , GLU D:179 , ARG D:185 , ILE D:442 , GLN D:445
BINDING SITE FOR RESIDUE BOG D 703
16
DC6
SOFTWARE
ARG D:120 , VAL D:349 , TYR D:355 , TYR D:385 , TRP D:387 , ALA D:527 , LEU D:531
BINDING SITE FOR RESIDUE T1N D 4
17
DC7
SOFTWARE
LYS D:83 , PRO D:84 , PRO D:86 , SER D:119 , ARG D:120 , LEU D:123 , GLU D:524
BINDING SITE FOR RESIDUE BOG D 8
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (C:110-583,D:110-583)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
-
-
C:110-583
D:110-583
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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Asym.Unit (782 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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