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3NTB
Asym. Unit
Info
Asym.Unit (782 KB)
Biol.Unit 1 (390 KB)
Biol.Unit 2 (388 KB)
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(1)
Title
:
STRUCTURE OF 6-METHYLTHIO NAPROXEN ANALOG BOUND TO MCOX-2.
Authors
:
K. C. Duggan, J. Musee, M. J. Walters, J. M. Harp, J. R. Kiefer, J. A. Oates L. J. Marnett
Date
:
03 Jul 10 (Deposition) - 01 Sep 10 (Release) - 17 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Prostaglandin H2 Synthase, Cyclooxygeanse-2, Naproxen Analog, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Duggan, M. J. Walters, J. Musee, J. M. Harp, J. R. Kiefer, J. A. Oates, L. J. Marnett
Molecular Basis For Cyclooxygenase Inhibition By The Non-Steroidal Anti-Inflammatory Drug Naproxen.
J. Biol. Chem. V. 285 34950 2010
[
close entry info
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Hetero Components
(4, 34)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4a: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Na)
4b: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nb)
4c: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nc)
4d: (2S)-2-[6-(METHYLSULFANYL)NAPHTHAL... (T1Nd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
6
Ligand/Ion
B-OCTYLGLUCOSIDE
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
T1N
4
Ligand/Ion
(2S)-2-[6-(METHYLSULFANYL)NAPHTHALEN-2-YL]PROPANOICACID
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:10 , ALA A:199 , PHE A:200 , ALA A:202 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , HIS A:214 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , VAL A:447
BINDING SITE FOR RESIDUE HEM A 619
02
AC2
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , HOH A:4050 , HOH A:4063
BINDING SITE FOR RESIDUE NAG A 661
03
AC3
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , NAG A:672 , HOH A:4017 , HOH A:4298 , HOH A:4799
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
ARG A:216 , NAG A:671 , NAG A:673
BINDING SITE FOR RESIDUE NAG A 672
05
AC5
SOFTWARE
NAG A:672 , HOH A:4059
BINDING SITE FOR RESIDUE NAG A 673
06
AC6
SOFTWARE
GLN A:406 , ASN A:410 , SER A:412 , ILE A:413
BINDING SITE FOR RESIDUE NAG A 681
07
AC7
SOFTWARE
GLU A:179 , ARG A:184 , ARG A:185 , ILE A:442 , GLN A:445 , ARG B:184 , ARG B:185 , ARG B:438 , GLU B:486 , GLU B:490
BINDING SITE FOR RESIDUE BOG A 703
08
AC8
SOFTWARE
ARG A:120 , VAL A:349 , LEU A:352 , TYR A:355 , TYR A:385 , TRP A:387 , VAL A:523 , ALA A:527 , LEU A:531
BINDING SITE FOR RESIDUE T1N A 3
09
AC9
SOFTWARE
LYS A:83 , PRO A:84 , VAL A:89 , SER A:119 , ARG A:120
BINDING SITE FOR RESIDUE BOG A 7
10
BC1
SOFTWARE
HOH B:19 , ALA B:199 , ALA B:202 , GLN B:203 , HIS B:207 , PHE B:210 , THR B:212 , HIS B:214 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , LEU B:408 , VAL B:447
BINDING SITE FOR RESIDUE HEM B 619
11
BC2
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , HOH B:4018 , HOH B:4422
BINDING SITE FOR RESIDUE NAG B 661
12
BC3
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , NAG B:672 , HOH B:4045 , HOH B:4370
BINDING SITE FOR RESIDUE NAG B 671
13
BC4
SOFTWARE
ASP A:239 , ARG B:216 , NAG B:671 , NAG B:673
BINDING SITE FOR RESIDUE NAG B 672
14
BC5
SOFTWARE
NAG B:672
BINDING SITE FOR RESIDUE NAG B 673
15
BC6
SOFTWARE
TYR B:402 , GLN B:406 , TYR B:409 , ASN B:410 , ILE B:413 , HOH B:4700
BINDING SITE FOR RESIDUE NAG B 681
16
BC7
SOFTWARE
ARG B:120 , VAL B:349 , TYR B:355 , TYR B:385 , TRP B:387 , VAL B:523 , GLY B:526 , ALA B:527 , LEU B:531
BINDING SITE FOR RESIDUE T1N B 1
17
BC8
SOFTWARE
LYS B:83 , PRO B:84 , PRO B:86 , TYR B:115 , SER B:119 , ARG B:120 , LEU B:123
BINDING SITE FOR RESIDUE BOG B 6
18
BC9
SOFTWARE
ALA C:199 , PHE C:200 , ALA C:202 , GLN C:203 , HIS C:207 , PHE C:210 , THR C:212 , HIS C:214 , VAL C:295 , ASN C:382 , TYR C:385 , HIS C:386 , HIS C:388 , LEU C:391 , LEU C:408 , ALA C:450 , HOH C:4061
BINDING SITE FOR RESIDUE HEM C 619
19
CC1
SOFTWARE
TYR C:55 , GLU C:67 , ASN C:68 , HOH C:4349
BINDING SITE FOR RESIDUE NAG C 661
20
CC2
SOFTWARE
ASN C:144 , TYR C:147 , ARG C:216 , NAG C:672 , HOH C:4085 , HOH C:4331 , HOH C:4974
BINDING SITE FOR RESIDUE NAG C 671
21
CC3
SOFTWARE
ARG C:216 , NAG C:671 , NAG C:673
BINDING SITE FOR RESIDUE NAG C 672
22
CC4
SOFTWARE
NAG C:672
BINDING SITE FOR RESIDUE NAG C 673
23
CC5
SOFTWARE
TYR C:402 , GLN C:406 , ASN C:410 , SER C:412 , ILE C:413 , HOH C:4055
BINDING SITE FOR RESIDUE NAG C 681
24
CC6
SOFTWARE
VAL C:116 , ARG C:120 , VAL C:349 , TYR C:355 , TYR C:385 , TRP C:387 , VAL C:523 , ALA C:527
BINDING SITE FOR RESIDUE T1N C 2
25
CC7
SOFTWARE
LYS C:83 , PRO C:84 , SER C:119 , ARG C:120
BINDING SITE FOR RESIDUE BOG C 5
26
CC8
SOFTWARE
ALA D:199 , PHE D:200 , ALA D:202 , GLN D:203 , HIS D:207 , PHE D:210 , LYS D:211 , THR D:212 , HIS D:214 , VAL D:295 , ASN D:382 , TYR D:385 , HIS D:386 , HIS D:388 , LEU D:391 , LEU D:408
BINDING SITE FOR RESIDUE HEM D 619
27
CC9
SOFTWARE
TYR D:55 , GLU D:67 , ASN D:68 , HOH D:654 , HOH D:689
BINDING SITE FOR RESIDUE NAG D 661
28
DC1
SOFTWARE
LEU C:238 , GLU D:140 , ASN D:144 , TYR D:147 , ARG D:216 , HOH D:640 , NAG D:672 , HOH D:4013 , HOH D:4295
BINDING SITE FOR RESIDUE NAG D 671
29
DC2
SOFTWARE
ARG D:216 , NAG D:671 , NAG D:673
BINDING SITE FOR RESIDUE NAG D 672
30
DC3
SOFTWARE
NAG D:672
BINDING SITE FOR RESIDUE NAG D 673
31
DC4
SOFTWARE
GLN D:406 , ASN D:410 , SER D:412 , ILE D:413 , GLU D:416 , HOH D:670 , HOH D:688 , HOH D:4821
BINDING SITE FOR RESIDUE NAG D 681
32
DC5
SOFTWARE
GLU C:179 , LYS C:180 , ARG C:184 , ARG C:185 , ARG C:438 , GLU C:486 , GLU C:490 , GLU D:179 , ARG D:185 , ILE D:442 , GLN D:445
BINDING SITE FOR RESIDUE BOG D 703
33
DC6
SOFTWARE
ARG D:120 , VAL D:349 , TYR D:355 , TYR D:385 , TRP D:387 , ALA D:527 , LEU D:531
BINDING SITE FOR RESIDUE T1N D 4
34
DC7
SOFTWARE
LYS D:83 , PRO D:84 , PRO D:86 , SER D:119 , ARG D:120 , LEU D:123 , GLU D:524
BINDING SITE FOR RESIDUE BOG D 8
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-583,B:110-582,C:110-583,D:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
4
A:110-583
B:110-582
C:110-583
D:110-583
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Info
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Sorry, no Info available
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