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3NRA
Asym. Unit
Info
Asym.Unit (271 KB)
Biol.Unit 1 (262 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ASPARTATE AMINOTRANSFERASE (YP_354942.1) FROM RHODOBACTER SPHAEROIDES 2.4.1 AT 2.15 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
30 Jun 10 (Deposition) - 04 Aug 10 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Aspartate Aminotransferase (Yp_354942. 1) From Rhodobacter Sphaeroides 2. 4. 1 At 2. 15 A Resolution
To Be Published
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Hetero Components
(6, 32)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
2a: 3-SULFINOALANINE (CSDa)
2b: 3-SULFINOALANINE (CSDb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
4b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
11
Ligand/Ion
CHLORIDE ION
2
CSD
2
Mod. Amino Acid
3-SULFINOALANINE
3
GOL
8
Ligand/Ion
GLYCEROL
4
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:189 , TYR A:338 , ARG A:380
BINDING SITE FOR RESIDUE CL A 501
02
AC2
SOFTWARE
PRO A:344 , LYS A:345 , ARG B:139
BINDING SITE FOR RESIDUE CL A 503
03
AC3
SOFTWARE
HIS A:51 , ARG A:307 , ARG A:310
BINDING SITE FOR RESIDUE CL A 504
04
AC4
SOFTWARE
GLU A:75 , LEU A:80 , HOH A:697
BINDING SITE FOR RESIDUE CL A 505
05
AC5
SOFTWARE
ARG A:284
BINDING SITE FOR RESIDUE CL A 510
06
AC6
SOFTWARE
PRO A:35 , ARG B:209
BINDING SITE FOR RESIDUE CL A 511
07
AC7
SOFTWARE
PRO A:151 , GLN A:153 , ASP A:167 , HOH A:642 , HOH A:750 , HOH B:662
BINDING SITE FOR RESIDUE GOL A 513
08
AC8
SOFTWARE
ALA A:159 , ARG A:323 , HOH A:607
BINDING SITE FOR RESIDUE GOL A 514
09
AC9
SOFTWARE
LYS A:176 , ARG A:209
BINDING SITE FOR RESIDUE GOL A 515
10
BC1
SOFTWARE
SER A:62 , GLN A:66 , HOH A:735 , HOH A:994 , PHE B:58
BINDING SITE FOR RESIDUE GOL A 516
11
BC2
SOFTWARE
GLU A:161 , THR A:162 , SER A:196 , ALA A:228 , SER A:229 , GLN A:334
BINDING SITE FOR RESIDUE GOL A 519
12
BC3
SOFTWARE
GLU A:161 , ALA A:226 , ARG A:315 , THR A:332 , GLN A:334 , HOH A:540
BINDING SITE FOR RESIDUE PEG A 520
13
BC4
SOFTWARE
ALA A:72 , ALA A:286 , GLY A:287 , SER B:257 , GLY B:258 , ARG B:260 , HOH B:1137
BINDING SITE FOR RESIDUE CL B 502
14
BC5
SOFTWARE
HIS B:51 , ARG B:307 , ARG B:310
BINDING SITE FOR RESIDUE CL B 506
15
BC6
SOFTWARE
GLU B:75 , ASP B:79 , LEU B:80 , HOH B:665
BINDING SITE FOR RESIDUE CL B 507
16
BC7
SOFTWARE
HOH A:867 , ARG B:284 , HOH B:973
BINDING SITE FOR RESIDUE CL B 508
17
BC8
SOFTWARE
ASN B:189 , TYR B:338 , ARG B:380
BINDING SITE FOR RESIDUE CL B 509
18
BC9
SOFTWARE
GLU B:161 , THR B:162 , SER B:196 , ALA B:228 , SER B:229 , GLN B:334
BINDING SITE FOR RESIDUE GOL B 512
19
CC1
SOFTWARE
HOH A:612 , HOH A:1054 , PRO B:151 , GLN B:153 , ASP B:167 , HOH B:577 , HOH B:637
BINDING SITE FOR RESIDUE GOL B 517
20
CC2
SOFTWARE
ARG B:21 , SER B:23 , SER B:229 , TYR B:230 , HOH B:550
BINDING SITE FOR RESIDUE GOL B 518
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aminotran_1_2_3nraB01 (B:45-397)
1b: PFAM_Aminotran_1_2_3nraB02 (B:45-397)
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(
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_1_2
(77)
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
(1)
1a
Aminotran_1_2-3nraB01
B:45-397
1b
Aminotran_1_2-3nraB02
B:45-397
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Asymmetric Unit 1
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Asym.Unit (271 KB)
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