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Asym. Unit
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Asym.Unit (81 KB)
Biol.Unit 1 (76 KB)
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Title
:
CRYSTAL STRUCTURE OF THE MUTANT I96S OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM COMPLEXED WITH INHIBITOR BMP
Authors
:
A. A. Fedorov, E. V. Fedorov, B. M. Wood, J. A. Gerlt, S. C. Almo
Date
:
29 Jun 10 (Deposition) - 11 May 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.53
Chains
:
Asym. Unit : A,B,I
#
Biol. Unit 1: A,B (1x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Orotidine 5'-Monophosphate Decarboxylase, Methanobacterium Thermoautotrophicum, Inhibitor Bmp, Lyase-Lyase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. Iiams, B. J. Desai, A. A. Fedorov, E. V. Fedorov, S. C. Almo, J. A. Gerl
Mechanism Of The Orotidine 5'-Monophosphate Decarboxylase-Catalyzed Reaction: Importance Of Residues In The Orotate Binding Site.
Biochemistry V. 50 8497 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPa)
1b: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPb)
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No.
Name
Count
Type
Full Name
1
BMP
2
Ligand/Ion
6-HYDROXYURIDINE-5'-PHOSPHATE
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:20 , LYS A:42 , ASP A:70 , LYS A:72 , MET A:126 , SER A:127 , PRO A:180 , GLN A:185 , GLY A:202 , ARG A:203 , HOH A:242 , HOH A:246 , ASP B:75 , ILE B:76 , THR B:79 , HOH I:7 , HOH I:23 , HOH I:34 , HOH I:47 , HOH I:63
BINDING SITE FOR RESIDUE BMP I 1
2
AC2
SOFTWARE
ASP A:75 , ILE A:76 , THR A:79 , ASP B:20 , LYS B:42 , ASP B:70 , LYS B:72 , MET B:126 , SER B:127 , PRO B:180 , GLN B:185 , GLY B:202 , ARG B:203 , HOH B:237 , HOH B:241 , HOH B:255 , HOH I:3 , HOH I:22 , HOH I:27 , HOH I:39
BINDING SITE FOR RESIDUE BMP I 2
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PROSITE Patterns/Profiles
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1: OMPDECASE (A:67-80,B:67-80)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPDECASE
PS00156
Orotidine 5'-phosphate decarboxylase active site.
PYRF_METTH
67-80
2
A:67-80
B:67-80
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SCOP Domains
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1a: SCOP_d3nqca_ (A:)
1b: SCOP_d3nqcb_ (B:)
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Class
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Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Decarboxylase
(172)
Protein domain
:
automated matches
(117)
Methanothermobacter thermautotrophicus [TaxId: 145262]
(26)
1a
d3nqca_
A:
1b
d3nqcb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_OMPdecase_3nqcB01 (B:13-218)
1b: PFAM_OMPdecase_3nqcB02 (B:13-218)
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Clan
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TIM_barrel
(694)
Family
:
OMPdecase
(84)
Methanobacterium thermoautotrophicum (strain Delta H)
(55)
1a
OMPdecase-3nqcB01
B:13-218
1b
OMPdecase-3nqcB02
B:13-218
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