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3NPY
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TYROSINASE FROM BACILLUS MEGATERIUM SOAKED IN CUSO4
Authors
:
M. Sendovski, M. Kanteev, N. Adir, A. Fishman
Date
:
29 Jun 10 (Deposition) - 17 Nov 10 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tyrosinase, Type3 Copper Proteins, Bacillus Megaterium, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sendovski, M. Kanteev, V. Shuster Ben-Yosef, N. Adir, A. Fishman
First Structures Of An Active Bacterial Tyrosinase Reveal Copper Plasticity.
J. Mol. Biol. V. 405 227 2011
(for further references see the
PDB file header
)
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
CU
4
Ligand/Ion
COPPER (II) ION
3
ZN
8
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:204 , HIS A:208 , PHE A:227 , HIS A:231 , HOH A:350 , CU A:502
BINDING SITE FOR RESIDUE CU A 501
02
AC2
SOFTWARE
HIS A:42 , HIS A:60 , HIS A:69 , HOH A:347 , HOH A:348 , HOH A:350 , CU A:501
BINDING SITE FOR RESIDUE CU A 502
03
AC3
SOFTWARE
HIS A:13 , ASP A:287 , CL A:510 , CL A:511
BINDING SITE FOR RESIDUE ZN A 505
04
AC4
SOFTWARE
HIS A:49 , CL A:513 , GLN B:142 , ASN B:144 , CL B:512
BINDING SITE FOR RESIDUE ZN A 506
05
AC5
SOFTWARE
GLU A:95 , ARG A:165 , HOH A:357
BINDING SITE FOR RESIDUE ZN A 507
06
AC6
SOFTWARE
ASP A:166 , HOH A:384 , ASP B:123
BINDING SITE FOR RESIDUE ZN A 508
07
AC7
SOFTWARE
HIS A:279 , HOH A:385 , HOH A:386
BINDING SITE FOR RESIDUE ZN A 509
08
AC8
SOFTWARE
HIS A:13 , ASP A:287 , ZN A:505 , CL A:511 , MET B:100 , GLN B:101
BINDING SITE FOR RESIDUE CL A 510
09
AC9
SOFTWARE
LYS A:9 , HIS A:13 , ZN A:505 , CL A:510
BINDING SITE FOR RESIDUE CL A 511
10
BC1
SOFTWARE
HIS A:49 , ZN A:506 , CL B:512
BINDING SITE FOR RESIDUE CL A 513
11
BC2
SOFTWARE
HIS A:49 , ZN A:506 , CL A:513 , ASN B:144
BINDING SITE FOR RESIDUE CL B 512
12
BC3
SOFTWARE
HIS B:204 , HIS B:208 , PHE B:227 , HIS B:231 , HOH B:342 , CU B:502
BINDING SITE FOR RESIDUE CU B 501
13
BC4
SOFTWARE
HIS B:42 , HIS B:60 , HIS B:69 , HOH B:342 , HOH B:343 , CU B:501
BINDING SITE FOR RESIDUE CU B 502
14
BC5
SOFTWARE
HIS B:13 , ASP B:287 , CL B:508 , CL B:509
BINDING SITE FOR RESIDUE ZN B 505
15
BC6
SOFTWARE
GLN A:142 , ASN A:144 , HIS B:49 , HOH B:376 , HOH B:388
BINDING SITE FOR RESIDUE ZN B 506
16
BC7
SOFTWARE
ILE B:243 , HIS B:279 , HOH B:377 , HOH B:378 , HOH B:380
BINDING SITE FOR RESIDUE ZN B 507
17
BC8
SOFTWARE
LYS B:9 , HIS B:13 , ASP B:287 , ZN B:505 , CL B:509
BINDING SITE FOR RESIDUE CL B 508
18
BC9
SOFTWARE
MET A:100 , GLN A:101 , HIS B:13 , ASP B:287 , ILE B:288 , ZN B:505 , CL B:508
BINDING SITE FOR RESIDUE CL B 509
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3npya_ (A:)
1b: SCOP_d3npyb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Di-copper centre-containing domain
(47)
Superfamily
:
Di-copper centre-containing domain
(47)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Bacillus megaterium [TaxId: 1404]
(12)
1a
d3npya_
A:
1b
d3npyb_
B:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Tyrosinase_3npyB01 (B:32-244)
1b: PFAM_Tyrosinase_3npyB02 (B:32-244)
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Clan
:
Di-copper
(13)
Family
:
Tyrosinase
(10)
Bacillus megaterium
(6)
1a
Tyrosinase-3npyB01
B:32-244
1b
Tyrosinase-3npyB02
B:32-244
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Asymmetric Unit 1
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