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3NN4
Asym. Unit
Info
Asym.Unit (427 KB)
Biol.Unit 1 (418 KB)
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(1)
Title
:
STRUCTURE OF CHLORITE DISMUTASE FROM CANDIDATUS NITROSPIRA DEFLUVII R173K MUTANT
Authors
:
J. Kostan, B. Sjoeblom, F. Maixner, G. Mlynek, P. G. Furtmueller, C. Obi M. Wagner, H. Daims, K. Djinovic-Carugo
Date
:
23 Jun 10 (Deposition) - 28 Jul 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Ferredoxin Like Fold, Chlorite Dismutation, Periplasmatic, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Kostan, B. Sjoeblom, F. Maixner, G. Mlynek, P. G. Furtmueller, C. Obinger, M. Wagner, H. Daims, K. Djinovic-Carugo
Structural And Functional Characterisation Of The Chlorite Dismutase From The Nitrite-Oxidizing Bacterium "Candidatus Nitrospira Defluvii": Identification Of A Catalytically Important Amino Acid Residue
J. Struct. Biol. V. 172 331 2010
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Hetero Components
(2, 26)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
5
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
SO4
21
Ligand/Ion
SULFATE ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:108 , THR A:109 , TYR A:110 , VAL A:111 , ILE A:137 , ILE A:139 , LYS A:141 , TRP A:145 , MET A:157 , HIS A:160 , THR A:161 , ALA A:164 , LEU A:168 , LYS A:173 , PHE A:186 , THR A:188 , PHE A:190 , LEU A:205 , GLU A:210 , HOH A:256
BINDING SITE FOR RESIDUE HEM A 239
02
AC2
SOFTWARE
LYS A:173 , LYS A:174 , LEU A:175 , HOH A:250
BINDING SITE FOR RESIDUE SO4 A 240
03
AC3
SOFTWARE
LYS A:140 , ARG A:215 , ARG A:216 , HIS C:219
BINDING SITE FOR RESIDUE SO4 A 241
04
AC4
SOFTWARE
LYS A:106 , THR A:109 , HIS A:177 , HIS C:199 , ARG C:203
BINDING SITE FOR RESIDUE SO4 A 242
05
AC5
SOFTWARE
ARG A:194 , LEU A:195 , GLU A:196 , TYR E:13
BINDING SITE FOR RESIDUE SO4 A 243
06
AC6
SOFTWARE
PRO B:108 , THR B:109 , TYR B:110 , VAL B:111 , ILE B:137 , LYS B:141 , TRP B:145 , MET B:157 , HIS B:160 , THR B:161 , ALA B:164 , LEU B:168 , LYS B:173 , PHE B:186 , THR B:188 , PHE B:190 , LEU B:205 , GLU B:210 , HOH B:277
BINDING SITE FOR RESIDUE HEM B 239
07
AC7
SOFTWARE
LYS B:173 , LYS B:174 , LEU B:175
BINDING SITE FOR RESIDUE SO4 B 240
08
AC8
SOFTWARE
LYS B:140 , ARG B:215 , ARG B:216 , HOH B:254 , HIS D:219
BINDING SITE FOR RESIDUE SO4 B 241
09
AC9
SOFTWARE
LYS B:106 , THR B:109 , HIS B:177 , HIS D:199 , ARG D:203
BINDING SITE FOR RESIDUE SO4 B 242
10
BC1
SOFTWARE
GLU B:193 , ARG B:194 , LEU B:195 , GLU B:196 , TYR C:13
BINDING SITE FOR RESIDUE SO4 B 243
11
BC2
SOFTWARE
PRO C:108 , THR C:109 , TYR C:110 , VAL C:111 , LEU C:122 , ILE C:137 , ILE C:139 , LYS C:141 , MET C:157 , HIS C:160 , THR C:161 , ALA C:164 , LEU C:168 , LYS C:173 , PHE C:186 , PHE C:190 , LEU C:201 , LEU C:205 , GLU C:210 , HOH C:267
BINDING SITE FOR RESIDUE HEM C 239
12
BC3
SOFTWARE
LYS C:173 , LYS C:174 , LEU C:175
BINDING SITE FOR RESIDUE SO4 C 240
13
BC4
SOFTWARE
HIS B:219 , LYS C:140 , ARG C:215
BINDING SITE FOR RESIDUE SO4 C 241
14
BC5
SOFTWARE
HIS B:199 , ARG B:203 , LYS C:106 , THR C:109 , HIS C:177
BINDING SITE FOR RESIDUE SO4 C 242
15
BC6
SOFTWARE
ASP B:27 , ARG C:90 , ARG C:93 , HIS C:94 , HOH C:266
BINDING SITE FOR RESIDUE SO4 C 243
16
BC7
SOFTWARE
TYR A:13 , GLU C:193 , ARG C:194 , LEU C:195 , GLU C:196
BINDING SITE FOR RESIDUE SO4 C 244
17
BC8
SOFTWARE
PRO D:108 , THR D:109 , TYR D:110 , VAL D:111 , LEU D:122 , ILE D:139 , LYS D:141 , TRP D:145 , MET D:157 , HIS D:160 , THR D:161 , ALA D:164 , LEU D:168 , LYS D:173 , LEU D:175 , PHE D:186 , THR D:188 , PHE D:190 , LEU D:201 , LEU D:205 , GLU D:210 , PHE D:217 , HOH D:253
BINDING SITE FOR RESIDUE HEM D 239
18
BC9
SOFTWARE
LYS D:173 , LYS D:174 , LEU D:175
BINDING SITE FOR RESIDUE SO4 D 240
19
CC1
SOFTWARE
TYR B:13 , GLU D:193 , ARG D:194 , LEU D:195 , HOH D:281
BINDING SITE FOR RESIDUE SO4 D 241
20
CC2
SOFTWARE
PRO E:108 , THR E:109 , TYR E:110 , VAL E:111 , ILE E:139 , LYS E:141 , TRP E:145 , MET E:157 , HIS E:160 , THR E:161 , ALA E:164 , LEU E:168 , LYS E:173 , PHE E:186 , PHE E:190 , LEU E:201 , LEU E:205 , GLU E:210
BINDING SITE FOR RESIDUE HEM E 239
21
CC3
SOFTWARE
LYS E:173 , LYS E:174 , LEU E:175 , HOH E:263
BINDING SITE FOR RESIDUE SO4 E 240
22
CC4
SOFTWARE
HIS A:219 , LYS E:140 , ARG E:215 , ARG E:216
BINDING SITE FOR RESIDUE SO4 E 241
23
CC5
SOFTWARE
LYS D:140 , ARG D:215 , HIS E:219 , HOH E:264
BINDING SITE FOR RESIDUE SO4 E 242
24
CC6
SOFTWARE
LYS D:106 , THR D:109 , HIS D:177 , HIS E:199 , ARG E:203 , HOH E:270
BINDING SITE FOR RESIDUE SO4 E 243
25
CC7
SOFTWARE
HIS A:199 , ARG A:203 , LYS E:106 , HIS E:177 , HOH E:276
BINDING SITE FOR RESIDUE SO4 E 244
26
CC8
SOFTWARE
TYR D:13 , ARG E:194 , LEU E:195 , GLU E:196
BINDING SITE FOR RESIDUE SO4 E 245
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Chlor_dismutase_3nn4E01 (E:31-224)
1b: PFAM_Chlor_dismutase_3nn4E02 (E:31-224)
1c: PFAM_Chlor_dismutase_3nn4E03 (E:31-224)
1d: PFAM_Chlor_dismutase_3nn4E04 (E:31-224)
1e: PFAM_Chlor_dismutase_3nn4E05 (E:31-224)
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Clans
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Clan
:
Dim_A_B_barrel
(36)
Family
:
Chlor_dismutase
(6)
Candidatus Nitrospira defluvii
(4)
1a
Chlor_dismutase-3nn4E01
E:31-224
1b
Chlor_dismutase-3nn4E02
E:31-224
1c
Chlor_dismutase-3nn4E03
E:31-224
1d
Chlor_dismutase-3nn4E04
E:31-224
1e
Chlor_dismutase-3nn4E05
E:31-224
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