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Getting 'Exon' information from database.
3NMZ
Asym. Unit
Info
Asym.Unit (334 KB)
Biol.Unit 1 (327 KB)
Biol.Unit 2 (166 KB)
Biol.Unit 3 (164 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APC COMPLEXED WITH ASEF
Authors
:
Z. Zhang, L. Chen, L. Gao, K. Lin, G. Wu
Date
:
23 Jun 10 (Deposition) - 06 Jul 11 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,C (1x)
Biol. Unit 3: B,D (1x)
Keywords
:
Protein-Protein Complex, Armadillo Repeats, Cell Adhesion-Cell Cycle Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, L. Chen, L. Gao, K. Lin, L. Zhu, Y. Lu, X. Shi, Y. Gao, J. Zhou, P. Xu, J. Zhang, G. Wu
Structural Basis For The Recognition Of Asef By Adenomatous Polyposis Coli
Cell Res. V. 22 372 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_005033 (R414C, chain A/B, )
2: VAR_009614 (S722G, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_005033
R
414
C
APC_HUMAN
Disease (FAP)
137854567
A/B
R
414
C
2
UniProt
VAR_009614
S
722
G
APC_HUMAN
Disease (FAP)
---
A/B
S
722
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SH3 (C:201-253,D:201-253)
2: ARM_REPEAT (A:660-702,B:660-702)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
ARHG4_HUMAN
201-253
2
C:201-253
D:201-253
2
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
APC_HUMAN
660-702
2
A:660-702
B:660-702
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Exons
(3, 6)
Info
All Exons
Exon 1.7 (C:171-189 | D:172-189)
Exon 1.10 (C:190-249 | D:190-249)
Exon 1.11c (C:250-255 | D:250-255)
View:
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All Exon Boundaries
1: Boundary 1.5a/1.7
2: Boundary 1.7/1.10
3: Boundary 1.10/1.11c
4: Boundary 1.11c/1.12b
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000326016
3c
ENSE00001205109
chr2:
131674224-131674634
411
ARHG4_HUMAN
-
0
0
-
-
1.3e
ENST00000326016
3e
ENSE00001287977
chr2:
131674970-131675071
102
ARHG4_HUMAN
-
0
0
-
-
1.4a
ENST00000326016
4a
ENSE00001720558
chr2:
131688525-131688830
306
ARHG4_HUMAN
1-100
100
0
-
-
1.5a
ENST00000326016
5a
ENSE00001173924
chr2:
131704082-131704208
127
ARHG4_HUMAN
101-143
43
0
-
-
1.7
ENST00000326016
7
ENSE00001070783
chr2:
131785518-131785657
140
ARHG4_HUMAN
143-189
47
2
C:171-189
D:172-189
19
18
1.10
ENST00000326016
10
ENSE00000921654
chr2:
131796426-131796605
180
ARHG4_HUMAN
190-249
60
2
C:190-249
D:190-249
60
60
1.11c
ENST00000326016
11c
ENSE00000921655
chr2:
131797589-131797765
177
ARHG4_HUMAN
250-308
59
2
C:250-255
D:250-255
6
6
1.12b
ENST00000326016
12b
ENSE00000921658
chr2:
131797834-131798013
180
ARHG4_HUMAN
309-368
60
0
-
-
1.13b
ENST00000326016
13b
ENSE00000921660
chr2:
131798803-131799035
233
ARHG4_HUMAN
369-446
78
0
-
-
1.13g
ENST00000326016
13g
ENSE00000921662
chr2:
131799388-131799517
130
ARHG4_HUMAN
446-489
44
0
-
-
1.14a
ENST00000326016
14a
ENSE00000921663
chr2:
131801025-131801156
132
ARHG4_HUMAN
490-533
44
0
-
-
1.15a
ENST00000326016
15a
ENSE00000921665
chr2:
131801872-131802115
244
ARHG4_HUMAN
534-615
82
0
-
-
1.16a
ENST00000326016
16a
ENSE00000921668
chr2:
131802942-131803019
78
ARHG4_HUMAN
615-641
27
0
-
-
1.16g
ENST00000326016
16g
ENSE00001821442
chr2:
131803611-131804826
1216
ARHG4_HUMAN
641-690
50
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_SH3_1_3nmzD01 (D:200-245)
1b: PFAM_SH3_1_3nmzD02 (D:200-245)
2a: PFAM_Arm_3nmzB01 (B:691-731)
2b: PFAM_Arm_3nmzB02 (B:691-731)
2c: PFAM_Arm_3nmzB03 (B:691-731)
2d: PFAM_Arm_3nmzB04 (B:691-731)
2e: PFAM_Arm_3nmzB05 (B:691-731)
2f: PFAM_Arm_3nmzB06 (B:691-731)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-3nmzD01
D:200-245
1b
SH3_1-3nmzD02
D:200-245
Clan
:
TPR
(230)
Family
:
Arm
(24)
Homo sapiens (Human)
(19)
2a
Arm-3nmzB01
B:691-731
2b
Arm-3nmzB02
B:691-731
2c
Arm-3nmzB03
B:691-731
2d
Arm-3nmzB04
B:691-731
2e
Arm-3nmzB05
B:691-731
2f
Arm-3nmzB06
B:691-731
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Asym.Unit (334 KB)
Header - Asym.Unit
Biol.Unit 1 (327 KB)
Header - Biol.Unit 1
Biol.Unit 2 (166 KB)
Header - Biol.Unit 2
Biol.Unit 3 (164 KB)
Header - Biol.Unit 3
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