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3NMI
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (22 KB)
Biol.Unit 3 (21 KB)
Biol.Unit 4 (21 KB)
Biol.Unit 5 (21 KB)
Biol.Unit 6 (21 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PHENANTHROLINE-MODIFIED CYTOCHROME CB562 VARIANT, MBP-PHEN2
Authors
:
R. J. Radford, F. A. Tezcan
Date
:
22 Jun 10 (Deposition) - 24 Nov 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
4-Helix-Bundle, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Radford, M. Lawrenz, P. C. Nguyen, J. A. Mccammon, F. A. Tezcan
Porous Protein Frameworks With Unsaturated Metal Centers In Sterically Encumbered Coordination Sites.
Chem. Commun. (Camb. ) V. 47 313 2011
[
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3a: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXa)
3b: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXb)
3c: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXc)
3d: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXd)
3e: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXe)
3f: N-1,10-PHENANTHROLIN-5-YLACETAMIDE (PXXf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
HEM
6
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
PXX
6
Ligand/Ion
N-1,10-PHENANTHROLIN-5-YLACETAMIDE
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:7 , ASN A:11 , LYS A:15 , PRO A:46 , PHE A:61 , PHE A:65 , CYS A:98 , CYS A:101 , HIS A:102 , TYR A:105 , ARG A:106 , HOH A:142 , HOH A:198
BINDING SITE FOR RESIDUE HEM A 150
02
AC2
SOFTWARE
ALA A:43 , PRO A:53 , ASP A:54 , MET A:58 , CYS A:59 , ALA A:62 , HOH A:112 , HOH A:128 , GLN C:41 , PXX C:151
BINDING SITE FOR RESIDUE PXX A 151
03
AC3
SOFTWARE
GLY A:64 , THR A:97 , CYS A:101 , LYS A:104 , LYS B:104 , HOH B:141
BINDING SITE FOR RESIDUE ACT A 107
04
AC4
SOFTWARE
ASN A:11 , LYS A:15 , GLU A:18 , LYS A:95 , ARG A:106 , HOH A:142
BINDING SITE FOR RESIDUE ACT A 108
05
AC5
SOFTWARE
MET B:7 , ASN B:11 , LYS B:15 , MET B:33 , PRO B:45 , PRO B:46 , PHE B:61 , PHE B:65 , CYS B:98 , CYS B:101 , HIS B:102 , TYR B:105 , ARG B:106 , HOH B:110 , HOH B:164 , HOH B:171
BINDING SITE FOR RESIDUE HEM B 150
06
AC6
SOFTWARE
ALA B:43 , PRO B:53 , ASP B:54 , MET B:58 , CYS B:59 , ALA B:62 , HOH B:127 , GLN F:41 , PXX F:151
BINDING SITE FOR RESIDUE PXX B 151
07
AC7
SOFTWARE
GLU C:4 , MET C:7 , PRO C:45 , PRO C:46 , PHE C:61 , PHE C:65 , CYS C:98 , CYS C:101 , HIS C:102 , TYR C:105 , ARG C:106 , HOH C:122 , ASN D:11 , LYS D:15 , ARG D:106
BINDING SITE FOR RESIDUE HEM C 150
08
AC8
SOFTWARE
GLN A:41 , PXX A:151 , GLN C:41 , LYS C:42 , ALA C:43 , PRO C:53 , ASP C:54 , MET C:58 , CYS C:59 , ALA C:62 , HOH C:121
BINDING SITE FOR RESIDUE PXX C 151
09
AC9
SOFTWARE
ASN C:99 , HIS C:102 , HIS D:102 , ARG D:106 , HOH D:108
BINDING SITE FOR RESIDUE ACT C 107
10
BC1
SOFTWARE
ASN C:11 , LYS C:15 , MET D:7 , PRO D:45 , PHE D:61 , PHE D:65 , THR D:97 , CYS D:98 , CYS D:101 , HIS D:102 , TYR D:105 , ARG D:106
BINDING SITE FOR RESIDUE HEM D 150
11
BC2
SOFTWARE
CYS D:59 , CYS E:59 , PXX E:151
BINDING SITE FOR RESIDUE PXX D 151
12
BC3
SOFTWARE
GLU E:4 , MET E:7 , PRO E:45 , PRO E:46 , PHE E:61 , PHE E:65 , THR E:97 , CYS E:98 , CYS E:101 , HIS E:102 , TYR E:105 , ARG E:106 , HOH E:240 , ASN F:11 , LYS F:15 , ARG F:106
BINDING SITE FOR RESIDUE HEM E 150
13
BC4
SOFTWARE
PXX D:151 , GLN E:41 , CYS E:59 , ALA E:62 , ALA E:66
BINDING SITE FOR RESIDUE PXX E 151
14
BC5
SOFTWARE
THR C:96 , HOH C:109 , GLN D:103 , LYS E:95 , THR E:96 , HOH E:114 , HOH E:181 , GLN F:103
BINDING SITE FOR RESIDUE ACT E 107
15
BC6
SOFTWARE
ASN E:99 , HIS E:102 , HOH E:183 , HIS F:102 , ARG F:106
BINDING SITE FOR RESIDUE ACT E 108
16
BC7
SOFTWARE
ASN E:11 , LYS E:15 , MET F:7 , ASN F:11 , PRO F:46 , PHE F:61 , CYS F:98 , CYS F:101 , HIS F:102 , TYR F:105 , ARG F:106
BINDING SITE FOR RESIDUE HEM F 150
17
BC8
SOFTWARE
GLN B:41 , ALA B:62 , PXX B:151 , ALA F:43 , PRO F:53 , MET F:58 , CYS F:59 , ALA F:62 , HOH F:110
BINDING SITE FOR RESIDUE PXX F 151
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3nmia_ (A:)
1b: SCOP_d3nmib_ (B:)
1c: SCOP_d3nmic_ (C:)
1d: SCOP_d3nmid_ (D:)
1e: SCOP_d3nmie_ (E:)
1f: SCOP_d3nmif_ (F:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Cytochromes
(82)
Family
:
Cytochrome b562
(38)
Protein domain
:
automated matches
(32)
Escherichia coli [TaxId: 562]
(31)
1a
d3nmia_
A:
1b
d3nmib_
B:
1c
d3nmic_
C:
1d
d3nmid_
D:
1e
d3nmie_
E:
1f
d3nmif_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Cytochrom_B562_3nmiF01 (F:1-106)
1b: PFAM_Cytochrom_B562_3nmiF02 (F:1-106)
1c: PFAM_Cytochrom_B562_3nmiF03 (F:1-106)
1d: PFAM_Cytochrom_B562_3nmiF04 (F:1-106)
1e: PFAM_Cytochrom_B562_3nmiF05 (F:1-106)
1f: PFAM_Cytochrom_B562_3nmiF06 (F:1-106)
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Clans
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(
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Families
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Cytochrom_B562]
(14)
Family
:
Cytochrom_B562
(14)
Escherichia coli
(13)
1a
Cytochrom_B562-3nmiF01
F:1-106
1b
Cytochrom_B562-3nmiF02
F:1-106
1c
Cytochrom_B562-3nmiF03
F:1-106
1d
Cytochrom_B562-3nmiF04
F:1-106
1e
Cytochrom_B562-3nmiF05
F:1-106
1f
Cytochrom_B562-3nmiF06
F:1-106
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