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3NMD
Asym. Unit
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Asym.Unit (103 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LEUCINE ZIPPER DOMAIN OF CGMP DEPENDENT PROTEIN KINASE I BETA
Authors
:
C. Kim, D. E. Casteel, E. V. Smith-Nguyen, B. Sankaran, Berkeley Struc Genomics Center (Bsgc)
Date
:
22 Jun 10 (Deposition) - 08 Sep 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Keywords
:
Leucine Zipper, Coiled-Coil, Structural Genomics, Berkeley Structural Genomics Center, Bsgc, Dimerization, Inositol Triphosphate Receptor- Associated Pkg Substrate, Transcriptional Regulator Tfii-I, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Casteel, E. V. Smith-Nguyen, B. Sankaran, S. H. Roh, R. B. Pilz, C. Kim
A Crystal Structure Of The Cyclic Gmp-Dependent Protein Kinase I{Beta} Dimerization/Docking Domain Reveals Molecula Details Of Isoform-Specific Anchoring.
J. Biol. Chem. V. 285 32684 2010
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: HEXANE-1,6-DIOL (HEZa)
2b: HEXANE-1,6-DIOL (HEZb)
2c: HEXANE-1,6-DIOL (HEZc)
2d: HEXANE-1,6-DIOL (HEZd)
2e: HEXANE-1,6-DIOL (HEZe)
2f: HEXANE-1,6-DIOL (HEZf)
2g: HEXANE-1,6-DIOL (HEZg)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HEZ
7
Ligand/Ion
HEXANE-1,6-DIOL
3
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:16 , ARG A:19 , ARG C:1
BINDING SITE FOR RESIDUE HEZ A 56
2
AC2
SOFTWARE
GLN B:20 , GLU C:16
BINDING SITE FOR RESIDUE HEZ C 56
3
AC3
SOFTWARE
LEU C:28 , GLU C:31 , HEZ D:56
BINDING SITE FOR RESIDUE HEZ C 57
4
AC4
SOFTWARE
ASP C:22 , ILE C:25 , ASP C:26 , HOH C:70 , ARG D:21
BINDING SITE FOR RESIDUE HEZ C 58
5
AC5
SOFTWARE
HEZ C:57 , GLU D:29 , ASP D:33
BINDING SITE FOR RESIDUE HEZ D 56
6
AC6
SOFTWARE
ALA D:23 , GLU D:27 , LEU D:30 , HOH D:65 , HOH D:67 , ARG E:19 , ALA E:23 , HOH E:62
BINDING SITE FOR RESIDUE HEZ D 57
7
AC7
SOFTWARE
ALA D:23 , LEU D:24 , GLU D:27 , ALA E:23 , LEU E:24 , GLU E:27
BINDING SITE FOR RESIDUE GOL E 56
8
AC8
SOFTWARE
GLU E:29 , ASP E:33 , LYS E:35 , ASP E:36 , HOH E:79
BINDING SITE FOR RESIDUE HEZ E 57
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:30-53,C:30-53,E:30-53|-)
2: CNMP_BINDING_1 (A:53-53,C:53-53,E:53-53|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
KGP1_HUMAN
103-218
221-342
3
A:30-53
C:30-53
E:30-53
-
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
KGP1_HUMAN
130-146
248-264
3
A:53-53
C:53-53
E:53-53
-
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Exons
(2, 8)
Info
All Exons
Exon 1.1a (A:2-20 (gaps) | B:4-50 (gaps) | C:...)
Exon 1.3a (A:21-54 (gaps) | - | C:21-53 (gaps...)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3a
3: Boundary 1.3a/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373985
1a
ENSE00001462090
chr10:
52751118-52751404
287
KGP1_HUMAN
1-77
77
5
A:2-20 (gaps)
B:4-50 (gaps)
C:1-20 (gaps)
D:2-51 (gaps)
E:3-20 (gaps)
22
72
23
68
21
1.3a
ENST00000373985
3a
ENSE00001290472
chr10:
52912924-52913090
167
KGP1_HUMAN
77-133
57
3
A:21-54 (gaps)
-
C:21-53 (gaps)
-
E:21-53 (gaps)
38
-
37
-
37
1.4
ENST00000373985
4
ENSE00001311075
chr10:
53227483-53227596
114
KGP1_HUMAN
133-171
39
0
-
-
1.5
ENST00000373985
5
ENSE00001319764
chr10:
53564345-53564450
106
KGP1_HUMAN
171-206
36
0
-
-
1.6
ENST00000373985
6
ENSE00001295696
chr10:
53667267-53667330
64
KGP1_HUMAN
206-227
22
0
-
-
1.9
ENST00000373985
9
ENSE00001660611
chr10:
53814244-53814321
78
KGP1_HUMAN
228-253
26
0
-
-
1.10
ENST00000373985
10
ENSE00001716439
chr10:
53822297-53822391
95
KGP1_HUMAN
254-285
32
0
-
-
1.13
ENST00000373985
13
ENSE00001660103
chr10:
53893600-53893665
66
KGP1_HUMAN
285-307
23
0
-
-
1.14
ENST00000373985
14
ENSE00001757920
chr10:
53921649-53921723
75
KGP1_HUMAN
307-332
26
0
-
-
1.15
ENST00000373985
15
ENSE00001724869
chr10:
54011330-54011426
97
KGP1_HUMAN
332-364
33
0
-
-
1.16
ENST00000373985
16
ENSE00001705894
chr10:
54031110-54031249
140
KGP1_HUMAN
365-411
47
0
-
-
1.17
ENST00000373985
17
ENSE00001313981
chr10:
54032152-54032241
90
KGP1_HUMAN
411-441
31
0
-
-
1.18
ENST00000373985
18
ENSE00001317306
chr10:
54040549-54040690
142
KGP1_HUMAN
441-488
48
0
-
-
1.19
ENST00000373985
19
ENSE00001323221
chr10:
54041913-54042076
164
KGP1_HUMAN
489-543
55
0
-
-
1.20
ENST00000373985
20
ENSE00001300564
chr10:
54048486-54048608
123
KGP1_HUMAN
543-584
42
0
-
-
1.21
ENST00000373985
21
ENSE00001321548
chr10:
54048691-54048753
63
KGP1_HUMAN
584-605
22
0
-
-
1.22
ENST00000373985
22
ENSE00001303642
chr10:
54049984-54050050
67
KGP1_HUMAN
605-627
23
0
-
-
1.23c
ENST00000373985
23c
ENSE00001462071
chr10:
54053562-54058110
4549
KGP1_HUMAN
628-659
32
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (103 KB)
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