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3NM3
Asym. Unit
Info
Asym.Unit (475 KB)
Biol.Unit 1 (466 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF CANDIDA GLABRATA THI6, A BIFUNCTIONAL ENZYME INVOLVED IN THIAMIN BIOSYHTHESIS OF EUKARYOTES
Authors
:
D. Paul, A. Chatterjee, T. P. Begley, S. E. Ealick
Date
:
21 Jun 10 (Deposition) - 10 Nov 10 (Release) - 29 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Thi6, Bifunctional Enzyme, Thiamin Biosynthesis, Eukaryoyes, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Paul, A. Chatterjee, T. P. Begley, S. E. Ealick
Domain Organization In Candida Glabrata Thi6, A Bifunctiona Enzyme Required For Thiamin Biosynthesis In Eukaryotes .
Biochemistry V. 49 9922 2010
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
2a: PYROPHOSPHATE 2- (POPa)
2b: PYROPHOSPHATE 2- (POPb)
2c: PYROPHOSPHATE 2- (POPc)
2d: PYROPHOSPHATE 2- (POPd)
2e: PYROPHOSPHATE 2- (POPe)
2f: PYROPHOSPHATE 2- (POPf)
3a: THIAMIN PHOSPHATE (TPSa)
3b: THIAMIN PHOSPHATE (TPSb)
3c: THIAMIN PHOSPHATE (TPSc)
3d: THIAMIN PHOSPHATE (TPSd)
3e: THIAMIN PHOSPHATE (TPSe)
3f: THIAMIN PHOSPHATE (TPSf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
6
Ligand/Ion
MAGNESIUM ION
2
POP
6
Ligand/Ion
PYROPHOSPHATE 2-
3
TPS
6
Ligand/Ion
THIAMIN PHOSPHATE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:76 , ASP A:95 , POP A:4001
BINDING SITE FOR RESIDUE MG A 3001
02
AC2
SOFTWARE
ASN B:75 , ASP B:76 , GLY B:92 , ASP B:95 , POP B:4002
BINDING SITE FOR RESIDUE MG B 3002
03
AC3
SOFTWARE
ASP C:76 , ASP C:95 , POP C:4003
BINDING SITE FOR RESIDUE MG C 3003
04
AC4
SOFTWARE
LYS D:47 , ASP D:76 , ASP D:95 , POP D:4004
BINDING SITE FOR RESIDUE MG D 3004
05
AC5
SOFTWARE
LYS E:47 , ASP E:76 , GLY E:92 , ASP E:95 , POP E:4005
BINDING SITE FOR RESIDUE MG E 3005
06
AC6
SOFTWARE
ASP F:76 , ASP F:95 , POP F:4006
BINDING SITE FOR RESIDUE MG F 3006
07
AC7
SOFTWARE
TYR A:13 , GLN A:43 , ARG A:45 , HIS A:90 , SER A:114 , THR A:143 , THR A:145 , LYS A:146 , ILE A:179 , GLY A:180 , GLY A:181 , VAL A:209 , SER A:210 , POP A:4001
BINDING SITE FOR RESIDUE TPS A 2001
08
AC8
SOFTWARE
TYR B:13 , GLN B:43 , ARG B:45 , HIS B:90 , THR B:143 , THR B:145 , ILE B:179 , GLY B:180 , GLY B:181 , CYS B:207 , VAL B:209 , SER B:210 , POP B:4002
BINDING SITE FOR RESIDUE TPS B 2002
09
AC9
SOFTWARE
GLN C:43 , ARG C:45 , HIS C:90 , SER C:114 , THR C:143 , THR C:145 , ILE C:179 , GLY C:181 , VAL C:209 , SER C:210 , POP C:4003
BINDING SITE FOR RESIDUE TPS C 2003
10
BC1
SOFTWARE
GLN D:43 , ARG D:45 , ASN D:75 , HIS D:90 , SER D:114 , THR D:143 , THR D:145 , ILE D:179 , GLY D:180 , GLY D:181 , VAL D:209 , SER D:210 , POP D:4004
BINDING SITE FOR RESIDUE TPS D 2004
11
BC2
SOFTWARE
GLN E:43 , ARG E:45 , ASN E:75 , HIS E:90 , SER E:114 , THR E:143 , THR E:145 , ILE E:179 , GLY E:180 , GLY E:181 , VAL E:209 , SER E:210 , POP E:4005
BINDING SITE FOR RESIDUE TPS E 2005
12
BC3
SOFTWARE
GLN F:43 , ARG F:45 , HIS F:90 , SER F:114 , THR F:143 , THR F:145 , ILE F:179 , GLY F:180 , GLY F:181 , VAL F:209 , SER F:210 , POP F:4006
BINDING SITE FOR RESIDUE TPS F 2006
13
BC4
SOFTWARE
ARG A:45 , LYS A:47 , ASN A:75 , ASP A:76 , GLY A:92 , ASP A:95 , SER A:114 , LYS A:146 , TPS A:2001 , MG A:3001
BINDING SITE FOR RESIDUE POP A 4001
14
BC5
SOFTWARE
ARG B:45 , LYS B:47 , ASN B:75 , ASP B:76 , GLY B:92 , ASP B:95 , SER B:114 , LYS B:146 , TPS B:2002 , MG B:3002
BINDING SITE FOR RESIDUE POP B 4002
15
BC6
SOFTWARE
ARG C:45 , LYS C:47 , ASN C:75 , ASP C:76 , GLY C:92 , ASP C:95 , SER C:114 , TPS C:2003 , MG C:3003
BINDING SITE FOR RESIDUE POP C 4003
16
BC7
SOFTWARE
ARG D:45 , LYS D:47 , ASN D:75 , ASP D:76 , GLY D:92 , SER D:114 , LYS D:146 , TPS D:2004 , MG D:3004
BINDING SITE FOR RESIDUE POP D 4004
17
BC8
SOFTWARE
ARG E:45 , LYS E:47 , ASN E:75 , ASP E:76 , GLY E:92 , SER E:114 , LYS E:146 , TPS E:2005 , MG E:3005
BINDING SITE FOR RESIDUE POP E 4005
18
BC9
SOFTWARE
ARG F:45 , ASN F:75 , ASP F:76 , GLY F:92 , SER F:114 , TPS F:2006 , MG F:3006
BINDING SITE FOR RESIDUE POP F 4006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_HK_3nm3F01 (F:257-527)
1b: PFAM_HK_3nm3F02 (F:257-527)
1c: PFAM_HK_3nm3F03 (F:257-527)
1d: PFAM_HK_3nm3F04 (F:257-527)
1e: PFAM_HK_3nm3F05 (F:257-527)
1f: PFAM_HK_3nm3F06 (F:257-527)
2a: PFAM_TMP_TENI_3nm3F07 (F:12-212)
2b: PFAM_TMP_TENI_3nm3F08 (F:12-212)
2c: PFAM_TMP_TENI_3nm3F09 (F:12-212)
2d: PFAM_TMP_TENI_3nm3F10 (F:12-212)
2e: PFAM_TMP_TENI_3nm3F11 (F:12-212)
2f: PFAM_TMP_TENI_3nm3F12 (F:12-212)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ribokinase
(55)
Family
:
HK
(6)
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (Yeast) (Torulopsis
(6)
1a
HK-3nm3F01
F:257-527
1b
HK-3nm3F02
F:257-527
1c
HK-3nm3F03
F:257-527
1d
HK-3nm3F04
F:257-527
1e
HK-3nm3F05
F:257-527
1f
HK-3nm3F06
F:257-527
Clan
:
TIM_barrel
(694)
Family
:
TMP-TENI
(9)
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (Yeast) (Torulopsis
(6)
2a
TMP-TENI-3nm3F07
F:12-212
2b
TMP-TENI-3nm3F08
F:12-212
2c
TMP-TENI-3nm3F09
F:12-212
2d
TMP-TENI-3nm3F10
F:12-212
2e
TMP-TENI-3nm3F11
F:12-212
2f
TMP-TENI-3nm3F12
F:12-212
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