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3NJP
Biol. Unit 1
Info
Asym.Unit (463 KB)
Biol.Unit 1 (453 KB)
Biol.Unit 2 (229 KB)
Biol.Unit 3 (230 KB)
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(1)
Title
:
THE EXTRACELLULAR AND TRANSMEMBRANE DOMAIN INTERFACES IN EPIDERMAL GROWTH FACTOR RECEPTOR SIGNALING
Authors
:
C. Lu, L. -Z. Mi, M. J. Grey, J. Zhu, E. Graef, S. Yokoyama, T. A. Springer
Date
:
17 Jun 10 (Deposition) - 13 Oct 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,C (1x)
Biol. Unit 3: B,D (1x)
Keywords
:
Receptor Tyrosine Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Lu, L. Z. Mi, M. J. Grey, J. Zhu, E. Graef, S. Yokoyama, T. A. Springer
Structural Evidence For Loose Linkage Between Ligand Bindin And Kinase Activation In The Epidermal Growth Factor Receptor.
Mol. Cell. Biol. V. 30 5432 2010
[
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Hetero Components
(2, 17)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
1b: NONAETHYLENE GLYCOL (2PEb)
1c: NONAETHYLENE GLYCOL (2PEc)
1d: NONAETHYLENE GLYCOL (2PEd)
1e: NONAETHYLENE GLYCOL (2PEe)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
5
Ligand/Ion
NONAETHYLENE GLYCOL
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:28 , ASN A:32 , ASN A:33
BINDING SITE FOR RESIDUE NAG A 1032
02
AC2
SOFTWARE
ASN A:49
BINDING SITE FOR RESIDUE NAG A 1049
03
AC3
SOFTWARE
ASN A:91 , SER A:92 , PHE A:148 , ASN A:151
BINDING SITE FOR RESIDUE NAG A 1151
04
AC4
SOFTWARE
ASN A:172 , THR B:548 , ASN B:554
BINDING SITE FOR RESIDUE NAG A 1172
05
AC5
SOFTWARE
PHE A:321 , SER A:324 , LEU A:325 , SER A:326 , ASN A:328 , ASN A:331 , ASP A:355 , THR A:358 , SER A:460
BINDING SITE FOR RESIDUE NAG A 1328
06
AC6
SOFTWARE
ASN A:337
BINDING SITE FOR RESIDUE NAG A 1337
07
AC7
SOFTWARE
GLU A:388 , ASN A:420
BINDING SITE FOR RESIDUE NAG A 1420
08
AC8
SOFTWARE
ASN A:504 , ASP A:513
BINDING SITE FOR RESIDUE NAG A 1504
09
AC9
SOFTWARE
GLN B:28 , ASN B:32 , ASN B:33
BINDING SITE FOR RESIDUE NAG B 1032
10
BC1
SOFTWARE
ASN B:91 , SER B:92 , ASN B:151
BINDING SITE FOR RESIDUE NAG B 1151
11
BC2
SOFTWARE
SER B:324 , LEU B:325 , SER B:326 , ASN B:328 , ASN B:331 , VAL B:350 , THR B:358
BINDING SITE FOR RESIDUE NAG B 1328
12
BC3
SOFTWARE
ARG B:503 , ASN B:504
BINDING SITE FOR RESIDUE NAG B 1504
13
BC4
SOFTWARE
2PE B:617
BINDING SITE FOR RESIDUE 2PE B 616
14
BC5
SOFTWARE
2PE B:616
BINDING SITE FOR RESIDUE 2PE B 617
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020971 (D11E, chain C/D, )
2: VAR_019293 (R74Q, chain A/B, )
3: VAR_019294 (P242R, chain A/B, )
4: VAR_072435 (G404D, chain A/B, )
5: VAR_019295 (R497K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020971
D
981
E
EGF_HUMAN
Polymorphism
11569086
C/D
D
11
E
2
UniProt
VAR_019293
R
98
Q
EGFR_HUMAN
Polymorphism
17289589
A/B
R
74
Q
3
UniProt
VAR_019294
P
266
R
EGFR_HUMAN
Polymorphism
17336639
A/B
P
242
R
4
UniProt
VAR_072435
G
428
D
EGFR_HUMAN
Disease (NISBD2)
---
A/B
G
404
D
5
UniProt
VAR_019295
R
521
K
EGFR_HUMAN
Polymorphism
2227983
A/B
R
497
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_2 (D:31-42)
2: EGF_1 (C:31-42,D:31-42)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
EGF_HUMAN
339-354
380-395
461-476
765-780
855-868
897-910
1001-1012
2
-
-
-
-
-
-
C:31-42
D:31-42
2
EGF_1
PS00022
EGF-like domain signature 1.
EGF_HUMAN
1001-1012
2
C:31-42
D:31-42
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_EGF_3njpD01 (D:5-41)
1b: PFAM_EGF_3njpD02 (D:5-41)
2a: PFAM_Furin_like_3njpB01 (B:153-314)
2b: PFAM_Furin_like_3njpB02 (B:153-314)
3a: PFAM_Recep_L_domain_3njpB03 (B:337-457)
3b: PFAM_Recep_L_domain_3njpB04 (B:337-457)
3c: PFAM_Recep_L_domain_3njpB05 (B:337-457)
3d: PFAM_Recep_L_domain_3njpB06 (B:337-457)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF
(31)
Homo sapiens (Human)
(25)
1a
EGF-3njpD01
D:5-41
1b
EGF-3njpD02
D:5-41
Clan
:
no clan defined [family: Furin-like]
(12)
Family
:
Furin-like
(12)
Homo sapiens (Human)
(9)
2a
Furin-like-3njpB01
B:153-314
2b
Furin-like-3njpB02
B:153-314
Clan
:
no clan defined [family: Recep_L_domain]
(12)
Family
:
Recep_L_domain
(12)
Homo sapiens (Human)
(9)
3a
Recep_L_domain-3njpB03
B:337-457
3b
Recep_L_domain-3njpB04
B:337-457
3c
Recep_L_domain-3njpB05
B:337-457
3d
Recep_L_domain-3njpB06
B:337-457
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Chain C
Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (463 KB)
Header - Asym.Unit
Biol.Unit 1 (453 KB)
Header - Biol.Unit 1
Biol.Unit 2 (229 KB)
Header - Biol.Unit 2
Biol.Unit 3 (230 KB)
Header - Biol.Unit 3
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