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3NIU
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF DIMERIC GOAT LACTOPEROXIDASE WITH DIETHYLENE GLYCOL AT 2.9 A RESOLUTION
Authors
:
G. Vikram, R. P. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Sin
Date
:
16 Jun 10 (Deposition) - 14 Jul 10 (Release) - 14 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lactoperoxidase, Complex, Diethylene Glycol, Phosphate, Milk Protein, Metal Binding Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Vikram, R. P. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Dimeric Goat Lactoperoxidase With Diethylene Glycol At 2. 9 A Resolution
To Be Published
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Hetero Components
(7, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
7a: PHOSPHOSERINE (SEPa)
7b: PHOSPHOSERINE (SEPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PO4
4
Ligand/Ion
PHOSPHATE ION
7
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:95 , ARG A:96 , ILE A:315 , ARG A:504 , NAG A:597 , PO4 A:2002
BINDING SITE FOR RESIDUE NAG A 596
02
AC2
SOFTWARE
ILE A:315 , ARG A:504 , NAG A:596 , HOH A:691
BINDING SITE FOR RESIDUE NAG A 597
03
AC3
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600
BINDING SITE FOR RESIDUE NAG A 599
04
AC4
SOFTWARE
TRP A:220 , NAG A:599 , BMA A:601
BINDING SITE FOR RESIDUE NAG A 600
05
AC5
SOFTWARE
NAG A:600
BINDING SITE FOR RESIDUE BMA A 601
06
AC6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , NAG A:603 , HOH A:769 , PHE B:70 , LYS B:485
BINDING SITE FOR RESIDUE NAG A 602
07
AC7
SOFTWARE
NAG A:602 , HOH A:814
BINDING SITE FOR RESIDUE NAG A 603
08
AC8
SOFTWARE
ASN A:332 , VAL A:335
BINDING SITE FOR RESIDUE NAG A 604
09
AC9
SOFTWARE
ALA A:44 , ARG A:45 , TRP A:46 , LEU A:47 , SER A:340 , ASN A:341 , VAL A:342 , MET A:446 , TRP A:452
BINDING SITE FOR RESIDUE PO4 A 2001
10
BC1
SOFTWARE
ASN A:95 , ARG A:96 , ARG A:504 , ARG A:506 , NAG A:596
BINDING SITE FOR RESIDUE PO4 A 2002
11
BC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 1000
12
BC3
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , HIS A:351 , PHE A:380 , ARG A:440 , PEG A:5001
BINDING SITE FOR RESIDUE HEM A 1001
13
BC4
SOFTWARE
HIS A:109 , SER A:254 , ARG A:255 , GLU A:258 , PHE A:381 , HEM A:1001
BINDING SITE FOR RESIDUE PEG A 5001
14
BC5
SOFTWARE
ASN B:95 , ARG B:96 , ILE B:315 , GLN B:568 , NAG B:597 , PO4 B:2003
BINDING SITE FOR RESIDUE NAG B 596
15
BC6
SOFTWARE
NAG B:596
BINDING SITE FOR RESIDUE NAG B 597
16
BC7
SOFTWARE
PHE A:70 , ASN B:241 , ALA B:244 , TRP B:384 , LYS B:388 , NAG B:603 , HOH B:617
BINDING SITE FOR RESIDUE NAG B 602
17
BC8
SOFTWARE
NAG B:602
BINDING SITE FOR RESIDUE NAG B 603
18
BC9
SOFTWARE
ASN B:205 , SER B:208 , ALA B:214 , VAL B:215 , GLN B:217 , NAG B:605
BINDING SITE FOR RESIDUE NAG B 604
19
CC1
SOFTWARE
ARG A:202 , GLN B:217 , NAG B:604 , BMA B:606 , HOH B:680
BINDING SITE FOR RESIDUE NAG B 605
20
CC2
SOFTWARE
NAG B:605 , HOH B:838
BINDING SITE FOR RESIDUE BMA B 606
21
CC3
SOFTWARE
ASN B:332
BINDING SITE FOR RESIDUE NAG B 607
22
CC4
SOFTWARE
ASN B:95 , ARG B:96 , ARG B:504 , ARG B:506 , NAG B:596
BINDING SITE FOR RESIDUE PO4 B 2003
23
CC5
SOFTWARE
ALA B:44 , ARG B:45 , TRP B:46 , LEU B:47 , SER B:340 , ASN B:341 , VAL B:342 , MET B:446 , TRP B:452
BINDING SITE FOR RESIDUE PO4 B 2004
24
CC6
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
BINDING SITE FOR RESIDUE CA B 1000
25
CC7
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , GLU B:258 , GLN B:259 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , PHE B:380 , GLN B:423 , ARG B:440 , HOH B:642 , HOH B:800 , PEG B:5001
BINDING SITE FOR RESIDUE HEM B 1021
26
CC8
SOFTWARE
GLN B:105 , HIS B:109 , PHE B:113 , ARG B:255 , GLU B:258 , HOH B:800 , HOH B:842 , HEM B:1021
BINDING SITE FOR RESIDUE PEG B 5001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3niuB01 (B:21-567)
1b: PFAM_An_peroxidase_3niuB02 (B:21-567)
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Clans
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Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Capra hircus (Goat)
(6)
1a
An_peroxidase-3niuB01
B:21-567
1b
An_peroxidase-3niuB02
B:21-567
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