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3NIC
Asym. Unit
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Asym.Unit (728 KB)
Biol.Unit 1 (183 KB)
Biol.Unit 2 (185 KB)
Biol.Unit 3 (180 KB)
Biol.Unit 4 (182 KB)
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(1)
Title
:
DNA BINDING AND CLEAVAGE BY THE GIY-YIG ENDONUCLEASE R.ECO29KI INACTIVE VARIANT Y49F
Authors
:
A. N. S. Mak, A. R. Lambert, B. L. Stoddard
Date
:
15 Jun 10 (Deposition) - 08 Sep 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,H,M,N (1x)
Biol. Unit 2: B,D,K,L (1x)
Biol. Unit 3: C,G,I,J (1x)
Biol. Unit 4: E,F,O,P (1x)
Keywords
:
Type Ii Restriction Endonuclease, Giy-Yig Endonuclease, Dna-Bound, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Mak, A. R. Lambert, B. L. Stoddard
Folding, Dna Recognition, And Function Of Giy-Yig Endonucleases: Crystal Structures Of R. Eco29Ki.
Structure V. 18 1321 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
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No.
Name
Count
Type
Full Name
1
PO4
11
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG E:8 , SER E:9
BINDING SITE FOR RESIDUE PO4 E 215
02
AC2
SOFTWARE
HIS B:194
BINDING SITE FOR RESIDUE PO4 B 215
03
AC3
SOFTWARE
LYS D:174 , HIS D:194
BINDING SITE FOR RESIDUE PO4 D 215
04
AC4
SOFTWARE
ARG G:8 , SER G:9
BINDING SITE FOR RESIDUE PO4 G 215
05
AC5
SOFTWARE
TYR F:57 , ASN F:117
BINDING SITE FOR RESIDUE PO4 F 215
06
AC6
SOFTWARE
GLU F:107 , HIS F:163 , THR F:164 , TRP F:186 , HOH F:452 , DG O:7 , DC O:8
BINDING SITE FOR RESIDUE PO4 F 216
07
AC7
SOFTWARE
SER D:195 , GLU D:196 , PHE D:199 , ARG D:203
BINDING SITE FOR RESIDUE PO4 D 216
08
AC8
SOFTWARE
HIS A:56 , ARG A:68
BINDING SITE FOR RESIDUE PO4 A 215
09
AC9
SOFTWARE
SER C:209 , LYS C:210 , LYS H:174 , HIS H:194
BINDING SITE FOR RESIDUE PO4 H 215
10
BC1
SOFTWARE
ARG C:65 , SER H:195 , GLU H:196 , PHE H:199 , ARG H:203
BINDING SITE FOR RESIDUE PO4 H 216
11
BC2
SOFTWARE
HIS B:56 , ARG B:68
BINDING SITE FOR RESIDUE PO4 B 216
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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CATH Domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_RE_Eco29kI_3nicH01 (H:40-210)
1b: PFAM_RE_Eco29kI_3nicH02 (H:40-210)
1c: PFAM_RE_Eco29kI_3nicH03 (H:40-210)
1d: PFAM_RE_Eco29kI_3nicH04 (H:40-210)
1e: PFAM_RE_Eco29kI_3nicH05 (H:40-210)
1f: PFAM_RE_Eco29kI_3nicH06 (H:40-210)
1g: PFAM_RE_Eco29kI_3nicH07 (H:40-210)
1h: PFAM_RE_Eco29kI_3nicH08 (H:40-210)
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Clans
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Clan
:
no clan defined [family: RE_Eco29kI]
(3)
Family
:
RE_Eco29kI
(3)
Escherichia coli
(3)
1a
RE_Eco29kI-3nicH01
H:40-210
1b
RE_Eco29kI-3nicH02
H:40-210
1c
RE_Eco29kI-3nicH03
H:40-210
1d
RE_Eco29kI-3nicH04
H:40-210
1e
RE_Eco29kI-3nicH05
H:40-210
1f
RE_Eco29kI-3nicH06
H:40-210
1g
RE_Eco29kI-3nicH07
H:40-210
1h
RE_Eco29kI-3nicH08
H:40-210
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Asym.Unit (728 KB)
Header - Asym.Unit
Biol.Unit 1 (183 KB)
Header - Biol.Unit 1
Biol.Unit 2 (185 KB)
Header - Biol.Unit 2
Biol.Unit 3 (180 KB)
Header - Biol.Unit 3
Biol.Unit 4 (182 KB)
Header - Biol.Unit 4
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