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3NG3
Asym. Unit
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Asym.Unit (261 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DEOXYRIBOSE PHOSPHATE ALDOLASE FROM MYCOBACTERIUM AVIUM 104 IN A SCHIFF BASE WITH AN UNKNOWN ALDEHYDE
Authors
:
Ssgcid, Seattle Structural Genomics Center For Infectious Dis (Ssgcid)
Date
:
10 Jun 10 (Deposition) - 23 Jun 10 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Sbri, Uw, Als Deoxyribosephosphate Aldolase, Mycobacterium Avium 104, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: UNKNOWN LIGAND (UNLa)
3b: UNKNOWN LIGAND (UNLb)
3c: UNKNOWN LIGAND (UNLc)
3d: UNKNOWN LIGAND (UNLd)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
UNL
4
Ligand/Ion
UNKNOWN LIGAND
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Sites
(5, 5)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
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Residues
Description
1
AC1
SOFTWARE
THR A:195 , SER D:131 , SER D:170
BINDING SITE FOR RESIDUE CL A 224
2
AC2
SOFTWARE
HIS B:71 , VAL B:72 , SER B:73 , LYS B:76 , ASP B:96 , ASP B:111 , HOH B:274
BINDING SITE FOR RESIDUE EDO B 224
3
AC3
SOFTWARE
VAL C:30 , VAL C:58 , ARG C:59
BINDING SITE FOR RESIDUE EDO C 224
4
AC4
SOFTWARE
ARG B:147 , GLU B:179 , ASP C:106 , ARG C:109
BINDING SITE FOR RESIDUE EDO C 225
5
AC5
SOFTWARE
ALA C:21 , THR C:22 , ALA C:23 , GLY D:98 , ALA D:99 , ALA D:102 , HOH D:286 , HOH D:478
BINDING SITE FOR RESIDUE EDO D 224
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ng3a_ (A:)
1b: SCOP_d3ng3b_ (B:)
1c: SCOP_d3ng3c_ (C:)
1d: SCOP_d3ng3d_ (D:)
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Protein Domains
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Mycobacterium avium [TaxId: 243243]
(1)
1a
d3ng3a_
A:
1b
d3ng3b_
B:
1c
d3ng3c_
C:
1d
d3ng3d_
D:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_DeoC_3ng3D01 (D:7-221)
1b: PFAM_DeoC_3ng3D02 (D:7-221)
1c: PFAM_DeoC_3ng3D03 (D:7-221)
1d: PFAM_DeoC_3ng3D04 (D:7-221)
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Clan
:
TIM_barrel
(694)
Family
:
DeoC
(21)
Mycobacterium avium (strain 104)
(1)
1a
DeoC-3ng3D01
D:7-221
1b
DeoC-3ng3D02
D:7-221
1c
DeoC-3ng3D03
D:7-221
1d
DeoC-3ng3D04
D:7-221
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Asym.Unit (261 KB)
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