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3NFP
Asym. Unit
Info
Asym.Unit (329 KB)
Biol.Unit 1 (162 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THERAPEUTIC ANTIBODY DACLIZUMAB IN COMPLEX WITH IL-2RA (CD25) ECTODOMAIN
Authors
:
H. Yang, J. Wang, J. Du, C. Zhong, Y. Guo, J. Ding
Date
:
10 Jun 10 (Deposition) - 15 Sep 10 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.86
Chains
:
Asym. Unit : A,B,H,I,K,L
Biol. Unit 1: A,B,K (1x)
Biol. Unit 2: H,I,L (1x)
Keywords
:
Il-2Ra, Cd25, Daclizumab, Zenapax, Therapeutic Antibody, Immune System, Immune System-Cytokine Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yang, J. Wang, J. Du, C. Zhong, D. Zhang, H. Guo, Y. Guo, J. Ding
Structural Basis Of Immunosuppression By The Therapeutic Antibody Daclizumab
Cell Res. V. 20 1361 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_074641 (Y20S, chain I/K, )
2: VAR_074642 (S145N, chain I/K, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_074641
Y
41
S
IL2RA_HUMAN
Disease (IMD41)
796051888
I/K
Y
20
S
2
UniProt
VAR_074642
S
166
N
IL2RA_HUMAN
Disease (IMD41)
796051887
I/K
S
145
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SUSHI (I:1-63,K:1-63|I:102-164,K:102-161)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
IL2RA_HUMAN
22-84
123-186
4
I:1-63
K:1-63
I:102-164
K:102-161
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Exons
(4, 8)
Info
All Exons
Exon 1.1b (I:1-1 | K:1-1)
Exon 1.2a (I:1-64 (gaps) | K:1-64 (gaps))
Exon 1.3 (I:101-102 | K:102-102)
Exon 1.4b (I:102-164 | K:102-161 (gaps))
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000379959
1b
ENSE00001867972
chr10:
6104288-6104051
238
IL2RA_HUMAN
1-22
22
2
I:1-1
K:1-1
1
1
1.2a
ENST00000379959
2a
ENSE00001132124
chr10:
6067988-6067797
192
IL2RA_HUMAN
22-86
65
2
I:1-64 (gaps)
K:1-64 (gaps)
64
64
1.3
ENST00000379959
3
ENSE00000915063
chr10:
6066317-6066207
111
IL2RA_HUMAN
86-123
38
2
I:101-102
K:102-102
2
1
1.4b
ENST00000379959
4b
ENSE00000915061
chr10:
6063656-6063441
216
IL2RA_HUMAN
123-195
73
2
I:102-164
K:102-161 (gaps)
63
60
1.5
ENST00000379959
5
ENSE00000915060
chr10:
6061904-6061833
72
IL2RA_HUMAN
195-219
25
0
-
-
1.6b
ENST00000379959
6b
ENSE00001194318
chr10:
6061462-6061391
72
IL2RA_HUMAN
219-243
25
0
-
-
1.7
ENST00000379959
7
ENSE00001219989
chr10:
6060082-6060016
67
IL2RA_HUMAN
243-265
23
0
-
-
1.8d
ENST00000379959
8d
ENSE00001889413
chr10:
6054859-6052652
2208
IL2RA_HUMAN
265-272
8
0
-
-
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SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d3nfpb1 (B:1-106)
1b: SCOP_d3nfpl1 (L:1-106)
2a: SCOP_d3nfpb2 (B:107-212)
2b: SCOP_d3nfpl2 (L:107-212)
3a: SCOP_d3nfpi1 (I:1-64)
3b: SCOP_d3nfpk1 (K:1-64)
3c: SCOP_d3nfpk2 (K:102-161)
3d: SCOP_d3nfpi2 (I:101-164)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3nfpb1
B:1-106
1b
d3nfpl1
L:1-106
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3nfpb2
B:107-212
2b
d3nfpl2
L:107-212
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Interleukin-2 receptor alpha chain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d3nfpi1
I:1-64
3b
d3nfpk1
K:1-64
3c
d3nfpk2
K:102-161
3d
d3nfpi2
I:101-164
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Sushi_3nfpK01 (K:104-161)
1b: PFAM_Sushi_3nfpK02 (K:104-161)
1c: PFAM_Sushi_3nfpK03 (K:104-161)
1d: PFAM_Sushi_3nfpK04 (K:104-161)
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Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
1a
Sushi-3nfpK01
K:104-161
1b
Sushi-3nfpK02
K:104-161
1c
Sushi-3nfpK03
K:104-161
1d
Sushi-3nfpK04
K:104-161
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Asym.Unit (329 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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