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3NDD
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (130 KB)
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(1)
Title
:
CLEAVED ANTITRYPSIN WITH P10 PRO, AND P9-P6 ASP
Authors
:
M. Yamasaki, T. J. Sendall, J. A. Huntington
Date
:
07 Jun 10 (Deposition) - 28 Jul 10 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Serpin, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yamasaki, T. J. Sendall, L. E. Harris, G. M. W. Lewis, J. A. Huntingto
Loop-Sheet Mechanism Of Serpin Polymerization Tested By Reactive Center Loop Mutations
J. Biol. Chem. V. 285 30752 2010
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(32, 32)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006980 (A34T, chain A, )
02: VAR_006981 (R39C, chain A, )
03: VAR_006982 (L41P, chain A, )
04: VAR_006983 (S45F, chain A, )
05: VAR_006985 (S53F, chain A, )
06: VAR_006986 (A60T, chain A, )
07: VAR_006987 (G67E, chain A, )
08: VAR_006988 (T68I, chain A, )
09: VAR_011620 (T85M, chain A, )
10: VAR_006989 (P88T, chain A, )
11: VAR_006990 (I92N, chain A, )
12: VAR_006991 (R101H, chain A, )
13: VAR_006992 (G115S, chain A, )
14: VAR_006993 (G148R, chain A, )
15: VAR_006994 (G148W, chain A, )
16: VAR_006995 (Q156E, chain A, )
17: VAR_006996 (E204K, chain A, )
18: VAR_006997 (V213A, chain A, )
19: VAR_006998 (R223C, chain A, )
20: VAR_006999 (D256V, chain A, )
21: VAR_007000 (E264V, chain A, )
22: VAR_007001 (S330F, chain A, )
23: VAR_007002 (A336T, chain A, )
24: VAR_007003 (D341N, chain A, )
25: VAR_007004 (E342K, chain A, )
26: VAR_007005 (R358R, chain A, )
27: VAR_007006 (P362H, chain B, )
28: VAR_007007 (P362T, chain B, )
29: VAR_007008 (E363K, chain B, )
30: VAR_007009 (P369L, chain B, )
31: VAR_007010 (E376D, chain B, )
32: VAR_007011 (P391H, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006980
A
58
T
A1AT_HUMAN
Unclassified
---
A
A
34
T
02
UniProt
VAR_006981
R
63
C
A1AT_HUMAN
Polymorphism
28931570
A
R
39
C
03
UniProt
VAR_006982
L
65
P
A1AT_HUMAN
Polymorphism
28931569
A
L
41
P
04
UniProt
VAR_006983
S
69
F
A1AT_HUMAN
Unclassified
---
A
S
45
F
05
UniProt
VAR_006985
S
77
F
A1AT_HUMAN
Polymorphism
55819880
A
S
53
F
06
UniProt
VAR_006986
A
84
T
A1AT_HUMAN
Unclassified
---
A
A
60
T
07
UniProt
VAR_006987
G
91
E
A1AT_HUMAN
Polymorphism
28931568
A
G
67
E
08
UniProt
VAR_006988
T
92
I
A1AT_HUMAN
Unclassified
---
A
T
68
I
09
UniProt
VAR_011620
T
109
M
A1AT_HUMAN
Unclassified
---
A
T
85
M
10
UniProt
VAR_006989
P
112
T
A1AT_HUMAN
Unclassified
---
A
P
88
T
11
UniProt
VAR_006990
I
116
N
A1AT_HUMAN
Polymorphism
28931572
A
I
92
N
12
UniProt
VAR_006991
R
125
H
A1AT_HUMAN
Polymorphism
709932
A
R
101
H
13
UniProt
VAR_006992
G
139
S
A1AT_HUMAN
Polymorphism
11558261
A
G
115
S
14
UniProt
VAR_006993
G
172
R
A1AT_HUMAN
Unclassified
---
A
G
148
R
15
UniProt
VAR_006994
G
172
W
A1AT_HUMAN
Unclassified
---
A
G
148
W
16
UniProt
VAR_006995
Q
180
E
A1AT_HUMAN
Unclassified
---
A
Q
156
E
17
UniProt
VAR_006996
E
228
K
A1AT_HUMAN
Unclassified
---
A
E
204
K
18
UniProt
VAR_006997
V
237
A
A1AT_HUMAN
Polymorphism
6647
A
V
213
A
19
UniProt
VAR_006998
R
247
C
A1AT_HUMAN
Polymorphism
28929470
A
R
223
C
20
UniProt
VAR_006999
D
280
V
A1AT_HUMAN
Polymorphism
28929472
A
D
256
V
21
UniProt
VAR_007000
E
288
V
A1AT_HUMAN
Polymorphism
17580
A
E
264
V
22
UniProt
VAR_007001
S
354
F
A1AT_HUMAN
Unclassified
---
A
S
330
F
23
UniProt
VAR_007002
A
360
T
A1AT_HUMAN
Polymorphism
1802959
A
A
336
T
24
UniProt
VAR_007003
D
365
N
A1AT_HUMAN
Unclassified
---
A
D
341
N
25
UniProt
VAR_007004
E
366
K
A1AT_HUMAN
Polymorphism
28929474
A
E
342
K
26
UniProt
VAR_007005
M
382
R
A1AT_HUMAN
Unclassified
---
A
R
358
R
27
UniProt
VAR_007006
P
386
H
A1AT_HUMAN
Unclassified
---
B
P
362
H
28
UniProt
VAR_007007
P
386
T
A1AT_HUMAN
Unclassified
---
B
P
362
T
29
UniProt
VAR_007008
E
387
K
A1AT_HUMAN
Polymorphism
121912712
B
E
363
K
30
UniProt
VAR_007009
P
393
L
A1AT_HUMAN
Unclassified
---
B
P
369
L
31
UniProt
VAR_007010
E
400
D
A1AT_HUMAN
Polymorphism
1303
B
E
376
D
32
UniProt
VAR_007011
P
415
H
A1AT_HUMAN
Unclassified
---
B
P
391
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (B:364-374)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
A1AT_HUMAN
388-398
1
B:364-374
[
close PROSITE info
]
Exons
(4, 5)
Info
All Exons
Exon 1.3b (A:24-192 | -)
Exon 1.4a (A:192-282 | -)
Exon 1.5a (A:282-331 | -)
Exon 1.6b (A:332-358 | B:359-393)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2d/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.5a
4: Boundary 1.5a/1.6b
5: Boundary 1.6b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000393088
1d
ENSE00001561696
chr14:
94856974-94856794
181
A1AT_HUMAN
-
0
0
-
-
1.2b
ENST00000393088
2b
ENSE00001514164
chr14:
94855347-94855138
210
A1AT_HUMAN
-
0
0
-
-
1.2d
ENST00000393088
2d
ENSE00001514163
chr14:
94855000-94854897
104
A1AT_HUMAN
-
0
0
-
-
1.3b
ENST00000393088
3b
ENSE00001302079
chr14:
94849578-94848929
650
A1AT_HUMAN
1-216
216
1
A:24-192
-
169
-
1.4a
ENST00000393088
4a
ENSE00001310159
chr14:
94847478-94847208
271
A1AT_HUMAN
216-306
91
1
A:192-282
-
91
-
1.5a
ENST00000393088
5a
ENSE00001226898
chr14:
94845948-94845801
148
A1AT_HUMAN
306-355
50
1
A:282-331
-
50
-
1.6b
ENST00000393088
6b
ENSE00001854348
chr14:
94844977-94844713
265
A1AT_HUMAN
356-418
63
2
A:332-358
B:359-393
27
35
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Serpin_3nddB01 (B:359-391)
1b: PFAM_Serpin_3nddB02 (B:359-391)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Serpin]
(63)
Family
:
Serpin
(63)
Homo sapiens (Human)
(41)
1a
Serpin-3nddB01
B:359-391
1b
Serpin-3nddB02
B:359-391
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