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3NCU
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
STRUCTURAL AND FUNCTIONAL INSIGHTS INTO PATTERN RECOGNITION BY THE INNATE IMMUNE RECEPTOR RIG-I
Authors
:
G. Sheng, H. Li
Date
:
05 Jun 10 (Deposition) - 30 Jun 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Innate Immune Receptor, Rig-I C-Terminal Domain, Rna Binding Protein- Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, J. Ludwig, C. Schuberth, M. Goldeck, M. Schlee, H. Li, S. Juranek, G. Sheng, R. Micura, T. Tuschl, G. Hartmann, D. J. Patel
Structural And Functional Insights Into 5'-Ppp Rna Pattern Recognition By The Innate Immune Receptor Rig-I.
Nat. Struct. Mol. Biol. V. 17 781 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Mod. Nucleotide
GUANOSINE-5'-DIPHOSPHATE
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:810 , CYS A:813 , CYS A:864 , CYS A:869
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS B:810 , CYS B:813 , CYS B:864 , CYS B:869
BINDING SITE FOR RESIDUE ZN B 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(2, 4)
Info
All Exons
Exon 1.17 (A:804-827 | B:804-827)
Exon 1.18a (A:828-923 | B:828-923)
View:
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18a
3: Boundary 1.18a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000379883
1a
ENSE00000928042
chr9:
32526322-32526059
264
DDX58_HUMAN
1-36
36
0
-
-
1.2
ENST00000379883
2
ENSE00001788537
chr9:
32500937-32500803
135
DDX58_HUMAN
36-81
46
0
-
-
1.3
ENST00000379883
3
ENSE00001679623
chr9:
32493940-32493759
182
DDX58_HUMAN
81-141
61
0
-
-
1.4
ENST00000379883
4
ENSE00000695271
chr9:
32492536-32492389
148
DDX58_HUMAN
142-191
50
0
-
-
1.5
ENST00000379883
5
ENSE00001797315
chr9:
32491418-32491299
120
DDX58_HUMAN
191-231
41
0
-
-
1.6
ENST00000379883
6
ENSE00000695265
chr9:
32489449-32489342
108
DDX58_HUMAN
231-267
37
0
-
-
1.7
ENST00000379883
7
ENSE00000695262
chr9:
32488885-32488732
154
DDX58_HUMAN
267-318
52
0
-
-
1.8
ENST00000379883
8
ENSE00000695259
chr9:
32488201-32487943
259
DDX58_HUMAN
318-404
87
0
-
-
1.9
ENST00000379883
9
ENSE00000695256
chr9:
32487631-32487469
163
DDX58_HUMAN
405-459
55
0
-
-
1.10
ENST00000379883
10
ENSE00000695252
chr9:
32485277-32485173
105
DDX58_HUMAN
459-494
36
0
-
-
1.11
ENST00000379883
11
ENSE00000695248
chr9:
32481495-32481338
158
DDX58_HUMAN
494-546
53
0
-
-
1.12
ENST00000379883
12
ENSE00000928040
chr9:
32480352-32480217
136
DDX58_HUMAN
547-592
46
0
-
-
1.13
ENST00000379883
13
ENSE00000982630
chr9:
32477129-32476981
149
DDX58_HUMAN
592-641
50
0
-
-
1.14
ENST00000379883
14
ENSE00000982631
chr9:
32473063-32472973
91
DDX58_HUMAN
642-672
31
0
-
-
1.15
ENST00000379883
15
ENSE00000982632
chr9:
32467930-32467760
171
DDX58_HUMAN
672-729
58
0
-
-
1.16
ENST00000379883
16
ENSE00000982633
chr9:
32466439-32466288
152
DDX58_HUMAN
729-779
51
0
-
-
1.17
ENST00000379883
17
ENSE00001091722
chr9:
32459512-32459369
144
DDX58_HUMAN
780-827
48
2
A:804-827
B:804-827
24
24
1.18a
ENST00000379883
18a
ENSE00001247665
chr9:
32457416-32455703
1714
DDX58_HUMAN
828-925
98
2
A:828-923
B:828-923
96
96
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ncua_ (A:)
1b: SCOP_d3ncub_ (B:)
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Classes
(
)
(
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(
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(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Mss4-like
(27)
Superfamily
:
RIG-I C-terminal-like
(10)
Family
:
RIG-I C-terminal domain-like
(9)
Protein domain
:
RIG-I C-terminal domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3ncua_
A:
1b
d3ncub_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RIG_I_C_RD_3ncuB01 (B:804-923)
1b: PFAM_RIG_I_C_RD_3ncuB02 (B:804-923)
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: RIG-I_C-RD]
(10)
Family
:
RIG-I_C-RD
(10)
Homo sapiens (Human)
(10)
1a
RIG-I_C-RD-3ncuB01
B:804-923
1b
RIG-I_C-RD-3ncuB02
B:804-923
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Chain D
Asymmetric Unit 1
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Asym.Unit (59 KB)
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