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3NBB
Asym. Unit
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Asym.Unit (704 KB)
Biol.Unit 1 (239 KB)
Biol.Unit 2 (239 KB)
Biol.Unit 3 (238 KB)
Biol.Unit 4 (695 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUTANT Y305F EXPRESSED IN E. COLI IN THE COPPER AMINE OXIDASE FROM HANSENULA POLYMORPHA
Authors
:
Z. Chen, S. Datta, J. L. Dubois, J. P. Klinman, F. S. Mathews
Date
:
03 Jun 10 (Deposition) - 25 Aug 10 (Release) - 08 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Amine Oxidase, Quinoprotein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. W. Chen, S. Datta, J. L. Dubois, J. P. Klinman, F. S. Mathews
Mutation At A Strictly Conserved, Active Site Tyrosine In The Copper Amine Oxidase Leads To Uncontrolled Oxygenase Activity.
Biochemistry V. 49 7393 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: HYDROXY-L-METHIONINE (ME0a)
2b: HYDROXY-L-METHIONINE (ME0b)
2c: HYDROXY-L-METHIONINE (ME0c)
2d: HYDROXY-L-METHIONINE (ME0d)
2e: HYDROXY-L-METHIONINE (ME0e)
2f: HYDROXY-L-METHIONINE (ME0f)
3a: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8a)
3b: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8b)
3c: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8c)
3d: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8d)
3e: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8e)
3f: 2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY8f)
4a: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9a)
4b: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9b)
4c: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9c)
4d: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9d)
4e: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9e)
4f: 3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-P... (TY9f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
2
ME0
6
Mod. Amino Acid
HYDROXY-L-METHIONINE
3
TY8
6
Mod. Amino Acid
2,4-BIS(HYDROPEROXY)-5-HYDROXY-L-PHENYLALANINE
4
TY9
6
Mod. Residue
3,4-BIS(HYDROPEROXY)-5-HYDROXY-L-PHENYLALANINE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TY8 A:405 , HIS A:456 , HIS A:458 , HIS A:624
BINDING SITE FOR RESIDUE CU A 701
2
AC2
SOFTWARE
TY8 B:405 , HIS B:456 , HIS B:458 , HIS B:624
BINDING SITE FOR RESIDUE CU B 701
3
AC3
SOFTWARE
TY8 C:405 , HIS C:456 , HIS C:458 , HIS C:624
BINDING SITE FOR RESIDUE CU C 701
4
AC4
SOFTWARE
TY8 D:405 , HIS D:456 , HIS D:458 , HIS D:624
BINDING SITE FOR RESIDUE CU D 701
5
AC5
SOFTWARE
TY8 E:405 , HIS E:456 , HIS E:458 , HIS E:624
BINDING SITE FOR RESIDUE CU E 701
6
AC6
SOFTWARE
TY8 F:405 , HIS F:456 , HIS F:458 , HIS F:624
BINDING SITE FOR RESIDUE CU F 701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:394-407,B:394-407,C:394-407,D:39...)
2: COPPER_AMINE_OXID_2 (A:619-632,B:619-632,C:619-632,D:61...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
AMO_PICAN
394-407
6
A:394-407
B:394-407
C:394-407
D:394-407
E:394-407
F:394-407
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
AMO_PICAN
619-632
6
A:619-632
B:619-632
C:619-632
D:619-632
E:619-632
F:619-632
[
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Exons
(0, 0)
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
(3, 18)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN2_3nbbF01 (F:23-109)
1b: PFAM_Cu_amine_oxidN2_3nbbF02 (F:23-109)
1c: PFAM_Cu_amine_oxidN2_3nbbF03 (F:23-109)
1d: PFAM_Cu_amine_oxidN2_3nbbF04 (F:23-109)
1e: PFAM_Cu_amine_oxidN2_3nbbF05 (F:23-109)
1f: PFAM_Cu_amine_oxidN2_3nbbF06 (F:23-109)
2a: PFAM_Cu_amine_oxidN3_3nbbF07 (F:114-216)
2b: PFAM_Cu_amine_oxidN3_3nbbF08 (F:114-216)
2c: PFAM_Cu_amine_oxidN3_3nbbF09 (F:114-216)
2d: PFAM_Cu_amine_oxidN3_3nbbF10 (F:114-216)
2e: PFAM_Cu_amine_oxidN3_3nbbF11 (F:114-216)
2f: PFAM_Cu_amine_oxidN3_3nbbF12 (F:114-216)
3a: PFAM_Cu_amine_oxid_3nbbF13 (F:241-662)
3b: PFAM_Cu_amine_oxid_3nbbF14 (F:241-662)
3c: PFAM_Cu_amine_oxid_3nbbF15 (F:241-662)
3d: PFAM_Cu_amine_oxid_3nbbF16 (F:241-662)
3e: PFAM_Cu_amine_oxid_3nbbF17 (F:241-662)
3f: PFAM_Cu_amine_oxid_3nbbF18 (F:241-662)
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Clans
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(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN2
(27)
Pichia angusta (Yeast) (Hansenula polymorpha)
(5)
1a
Cu_amine_oxidN2-3nbbF01
F:23-109
1b
Cu_amine_oxidN2-3nbbF02
F:23-109
1c
Cu_amine_oxidN2-3nbbF03
F:23-109
1d
Cu_amine_oxidN2-3nbbF04
F:23-109
1e
Cu_amine_oxidN2-3nbbF05
F:23-109
1f
Cu_amine_oxidN2-3nbbF06
F:23-109
Family
:
Cu_amine_oxidN3
(37)
Pichia angusta (Yeast) (Hansenula polymorpha)
(5)
2a
Cu_amine_oxidN3-3nbbF07
F:114-216
2b
Cu_amine_oxidN3-3nbbF08
F:114-216
2c
Cu_amine_oxidN3-3nbbF09
F:114-216
2d
Cu_amine_oxidN3-3nbbF10
F:114-216
2e
Cu_amine_oxidN3-3nbbF11
F:114-216
2f
Cu_amine_oxidN3-3nbbF12
F:114-216
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Pichia angusta (Yeast) (Hansenula polymorpha)
(5)
3a
Cu_amine_oxid-3nbbF13
F:241-662
3b
Cu_amine_oxid-3nbbF14
F:241-662
3c
Cu_amine_oxid-3nbbF15
F:241-662
3d
Cu_amine_oxid-3nbbF16
F:241-662
3e
Cu_amine_oxid-3nbbF17
F:241-662
3f
Cu_amine_oxid-3nbbF18
F:241-662
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Asym.Unit (704 KB)
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