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3NB2
Biol. Unit 3
Info
Asym.Unit (855 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (218 KB)
Biol.Unit 4 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI O157:H7 EFFECTOR PROTEIN NLEL
Authors
:
D. Y. Lin, J. Chen
Date
:
02 Jun 10 (Deposition) - 27 Oct 10 (Release) - 19 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Secreted Effector Protein, Pentapeptide, Hect Domain, Hect E3 Ubiquitin Ligase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Y. Lin, J. Diao, D. Zhou, J. Chen
Biochemical And Structural Studies Of A Hect-Like Ubiquitin Ligase From Escherichia Coli O157:H7.
J. Biol. Chem. V. 286 441 2011
[
close entry info
]
Hetero Components
(4, 15)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
3e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
GOL
7
Ligand/Ion
GLYCEROL
3
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC8 (SOFTWARE)
20: DC9 (SOFTWARE)
21: EC1 (SOFTWARE)
22: EC2 (SOFTWARE)
23: EC3 (SOFTWARE)
24: EC4 (SOFTWARE)
25: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GOL A:2 , PHE A:440 , MET A:446 , TYR C:401 , TRP C:439
BINDING SITE FOR RESIDUE GOL A 1
02
AC2
SOFTWARE
GOL A:1 , TYR A:401 , DTT A:785 , MET C:446
BINDING SITE FOR RESIDUE GOL A 2
03
AC3
SOFTWARE
GOL A:19 , HOH A:49 , ASN A:356 , TYR A:357 , HOH A:789 , TYR C:357
BINDING SITE FOR RESIDUE GOL A 4
04
AC8
SOFTWARE
SER A:443 , ILE A:444 , HOH A:824 , HOH A:1071 , THR C:435 , TRP C:439
BINDING SITE FOR RESIDUE GOL A 15
05
BC2
SOFTWARE
GOL A:4 , TYR A:357 , HOH A:988 , HOH C:59 , ASN C:356 , GLU C:449
BINDING SITE FOR RESIDUE GOL A 19
06
BC4
SOFTWARE
ARG A:782 , HOH A:836 , SER C:469 , TYR C:470
BINDING SITE FOR RESIDUE GOL A 25
07
BC5
SOFTWARE
ARG A:234 , MET A:235 , ASN A:254 , GLU A:255 , ASP C:372 , ASP C:373 , ASN D:191
BINDING SITE FOR RESIDUE MES A 3
08
BC6
SOFTWARE
HIS A:463 , PRO A:464 , GLY A:465 , ALA A:466 , HOH A:855 , ASN C:632 , LYS C:633
BINDING SITE FOR RESIDUE SO4 A 5
09
BC7
SOFTWARE
LYS A:359 , HOH A:870 , GOL C:22
BINDING SITE FOR RESIDUE SO4 A 783
10
CC1
SOFTWARE
GOL A:2 , PHE A:398 , THR A:435 , ILE A:436 , TRP A:439 , PHE C:440 , SER C:443 , ILE C:444
BINDING SITE FOR RESIDUE DTT A 785
11
CC9
SOFTWARE
PRO C:297 , ILE C:298 , LEU C:299 , ASN C:300 , VAL C:314 , SER C:316
BINDING SITE FOR RESIDUE GOL C 11
12
DC1
SOFTWARE
PHE C:769 , PRO C:770 , GLU C:771 , ILE C:772
BINDING SITE FOR RESIDUE GOL C 17
13
DC2
SOFTWARE
HOH C:59 , ASN C:356 , ASN C:369 , SER C:409 , GLU C:449 , HOH C:830
BINDING SITE FOR RESIDUE GOL C 20
14
DC3
SOFTWARE
GOL C:22 , TYR C:447 , MET C:448 , ASN C:480 , ARG C:484 , HOH C:805 , HOH C:806 , HOH C:992 , HOH C:1024
BINDING SITE FOR RESIDUE GOL C 21
15
DC4
SOFTWARE
THR A:358 , SO4 A:783 , HOH A:871 , GOL C:21 , TYR C:447 , HOH C:807 , HOH C:983
BINDING SITE FOR RESIDUE GOL C 22
16
DC5
SOFTWARE
SER C:596 , HIS C:600 , SER C:774 , ARG C:782 , HOH C:1048
BINDING SITE FOR RESIDUE GOL C 23
17
DC6
SOFTWARE
THR A:435 , ILE C:444 , LEU C:557
BINDING SITE FOR RESIDUE GOL C 29
18
DC7
SOFTWARE
TYR A:735 , ASN A:738 , ASP A:742 , ARG C:743 , ASN C:749 , PHE C:751 , THR C:752 , VAL C:756
BINDING SITE FOR RESIDUE MES C 1
19
DC8
SOFTWARE
ASP A:372 , ASP A:373 , ARG C:234 , ASN C:254 , GLU C:255 , HOH C:889
BINDING SITE FOR RESIDUE MES C 2
20
DC9
SOFTWARE
GLU C:620 , ARG C:624 , TYR C:636 , HOH C:932
BINDING SITE FOR RESIDUE SO4 C 783
21
EC1
SOFTWARE
ARG C:624
BINDING SITE FOR RESIDUE SO4 C 3
22
EC2
SOFTWARE
GLY C:486 , MET C:487 , GLN C:488 , GLU C:489
BINDING SITE FOR RESIDUE SO4 C 7
23
EC3
SOFTWARE
SER C:177 , LYS C:178 , HOH C:786 , HOH C:1235
BINDING SITE FOR RESIDUE SO4 C 10
24
EC4
SOFTWARE
ARG C:399 , PRO C:400 , TYR C:401 , VAL C:402
BINDING SITE FOR RESIDUE SO4 C 784
25
EC5
SOFTWARE
TYR A:736 , MET A:760 , HIS A:764 , GLU A:767 , HOH C:147 , SER C:733 , TYR C:735 , TYR C:736
BINDING SITE FOR RESIDUE DTT C 785
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (855 KB)
Header - Asym.Unit
Biol.Unit 1 (218 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
Biol.Unit 3 (218 KB)
Header - Biol.Unit 3
Biol.Unit 4 (216 KB)
Header - Biol.Unit 4
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