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3NB2
Asym. Unit
Info
Asym.Unit (855 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (218 KB)
Biol.Unit 4 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI O157:H7 EFFECTOR PROTEIN NLEL
Authors
:
D. Y. Lin, J. Chen
Date
:
02 Jun 10 (Deposition) - 27 Oct 10 (Release) - 19 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Secreted Effector Protein, Pentapeptide, Hect Domain, Hect E3 Ubiquitin Ligase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Y. Lin, J. Diao, D. Zhou, J. Chen
Biochemical And Structural Studies Of A Hect-Like Ubiquitin Ligase From Escherichia Coli O157:H7.
J. Biol. Chem. V. 286 441 2011
[
close entry info
]
Hetero Components
(4, 52)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
3e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
2
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
GOL
29
Ligand/Ion
GLYCEROL
3
MES
5
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(52, 52)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GOL A:2 , PHE A:440 , MET A:446 , TYR C:401 , TRP C:439
BINDING SITE FOR RESIDUE GOL A 1
02
AC2
SOFTWARE
GOL A:1 , TYR A:401 , DTT A:785 , MET C:446
BINDING SITE FOR RESIDUE GOL A 2
03
AC3
SOFTWARE
GOL A:19 , HOH A:49 , ASN A:356 , TYR A:357 , HOH A:789 , TYR C:357
BINDING SITE FOR RESIDUE GOL A 4
04
AC4
SOFTWARE
PHE A:607 , GLY A:610 , ILE A:611 , HOH A:909 , SER B:511 , HOH B:938
BINDING SITE FOR RESIDUE GOL A 7
05
AC5
SOFTWARE
ILE A:412 , HIS A:413 , ASN A:450 , HOH A:857 , HOH A:900 , HOH A:1054
BINDING SITE FOR RESIDUE GOL A 12
06
AC6
SOFTWARE
HIS A:552 , ASN A:564 , HOH A:906 , ASN B:564
BINDING SITE FOR RESIDUE GOL A 13
07
AC7
SOFTWARE
ASP A:613 , ILE A:614 , LEU A:615 , SER A:617 , HOH A:934 , ASP B:517 , GLY B:518 , HOH B:1130
BINDING SITE FOR RESIDUE GOL A 14
08
AC8
SOFTWARE
SER A:443 , ILE A:444 , HOH A:824 , HOH A:1071 , THR C:435 , TRP C:439
BINDING SITE FOR RESIDUE GOL A 15
09
AC9
SOFTWARE
PHE A:769 , PRO A:770 , GLU A:771 , ILE A:772
BINDING SITE FOR RESIDUE GOL A 16
10
BC1
SOFTWARE
GLY A:321 , ASP A:322 , VAL A:323 , LYS A:374 , TYR A:375 , ASP A:378
BINDING SITE FOR RESIDUE GOL A 18
11
BC2
SOFTWARE
GOL A:4 , TYR A:357 , HOH A:988 , HOH C:59 , ASN C:356 , GLU C:449
BINDING SITE FOR RESIDUE GOL A 19
12
BC3
SOFTWARE
TYR A:724 , VAL A:734 , TYR A:737 , ASN A:738
BINDING SITE FOR RESIDUE GOL A 24
13
BC4
SOFTWARE
ARG A:782 , HOH A:836 , SER C:469 , TYR C:470
BINDING SITE FOR RESIDUE GOL A 25
14
BC5
SOFTWARE
ARG A:234 , MET A:235 , ASN A:254 , GLU A:255 , ASP C:372 , ASP C:373 , ASN D:191
BINDING SITE FOR RESIDUE MES A 3
15
BC6
SOFTWARE
HIS A:463 , PRO A:464 , GLY A:465 , ALA A:466 , HOH A:855 , ASN C:632 , LYS C:633
BINDING SITE FOR RESIDUE SO4 A 5
16
BC7
SOFTWARE
LYS A:359 , HOH A:870 , GOL C:22
BINDING SITE FOR RESIDUE SO4 A 783
17
BC8
SOFTWARE
GLU A:620 , ARG A:624 , TYR A:636 , LYS A:646 , HOH A:918
BINDING SITE FOR RESIDUE SO4 A 784
18
BC9
SOFTWARE
GLY A:486 , MET A:487 , GLN A:488 , GLU A:489
BINDING SITE FOR RESIDUE SO4 A 17
19
CC1
SOFTWARE
GOL A:2 , PHE A:398 , THR A:435 , ILE A:436 , TRP A:439 , PHE C:440 , SER C:443 , ILE C:444
BINDING SITE FOR RESIDUE DTT A 785
20
CC2
SOFTWARE
ASN B:356 , GLU B:449 , HOH B:802 , HOH B:1140
BINDING SITE FOR RESIDUE GOL B 3
21
CC3
SOFTWARE
TYR B:401 , GOL D:5
BINDING SITE FOR RESIDUE GOL B 6
22
CC4
SOFTWARE
SER A:511 , ASN B:606 , PHE B:607 , GLY B:610 , ILE B:611 , SER B:671 , HOH B:878
BINDING SITE FOR RESIDUE GOL B 8
23
CC5
SOFTWARE
TYR B:357 , HOH B:851 , TYR D:357 , GLU D:449 , HOH D:865
BINDING SITE FOR RESIDUE GOL B 10
24
CC6
SOFTWARE
GLY B:486 , MET B:487 , GLN B:488 , GLU B:489
BINDING SITE FOR RESIDUE SO4 B 783
25
CC7
SOFTWARE
ARG B:399 , PRO B:400 , TYR B:401 , VAL B:402
BINDING SITE FOR RESIDUE SO4 B 784
26
CC8
SOFTWARE
TYR A:532 , MET A:566 , PHE A:568 , PHE A:569 , HIS B:672
BINDING SITE FOR RESIDUE SO4 B 12
27
CC9
SOFTWARE
PRO C:297 , ILE C:298 , LEU C:299 , ASN C:300 , VAL C:314 , SER C:316
BINDING SITE FOR RESIDUE GOL C 11
28
DC1
SOFTWARE
PHE C:769 , PRO C:770 , GLU C:771 , ILE C:772
BINDING SITE FOR RESIDUE GOL C 17
29
DC2
SOFTWARE
HOH C:59 , ASN C:356 , ASN C:369 , SER C:409 , GLU C:449 , HOH C:830
BINDING SITE FOR RESIDUE GOL C 20
30
DC3
SOFTWARE
GOL C:22 , TYR C:447 , MET C:448 , ASN C:480 , ARG C:484 , HOH C:805 , HOH C:806 , HOH C:992 , HOH C:1024
BINDING SITE FOR RESIDUE GOL C 21
31
DC4
SOFTWARE
THR A:358 , SO4 A:783 , HOH A:871 , GOL C:21 , TYR C:447 , HOH C:807 , HOH C:983
BINDING SITE FOR RESIDUE GOL C 22
32
DC5
SOFTWARE
SER C:596 , HIS C:600 , SER C:774 , ARG C:782 , HOH C:1048
BINDING SITE FOR RESIDUE GOL C 23
33
DC6
SOFTWARE
THR A:435 , ILE C:444 , LEU C:557
BINDING SITE FOR RESIDUE GOL C 29
34
DC7
SOFTWARE
TYR A:735 , ASN A:738 , ASP A:742 , ARG C:743 , ASN C:749 , PHE C:751 , THR C:752 , VAL C:756
BINDING SITE FOR RESIDUE MES C 1
35
DC8
SOFTWARE
ASP A:372 , ASP A:373 , ARG C:234 , ASN C:254 , GLU C:255 , HOH C:889
BINDING SITE FOR RESIDUE MES C 2
36
DC9
SOFTWARE
GLU C:620 , ARG C:624 , TYR C:636 , HOH C:932
BINDING SITE FOR RESIDUE SO4 C 783
37
EC1
SOFTWARE
ARG C:624
BINDING SITE FOR RESIDUE SO4 C 3
38
EC2
SOFTWARE
GLY C:486 , MET C:487 , GLN C:488 , GLU C:489
BINDING SITE FOR RESIDUE SO4 C 7
39
EC3
SOFTWARE
SER C:177 , LYS C:178 , HOH C:786 , HOH C:1235
BINDING SITE FOR RESIDUE SO4 C 10
40
EC4
SOFTWARE
ARG C:399 , PRO C:400 , TYR C:401 , VAL C:402
BINDING SITE FOR RESIDUE SO4 C 784
41
EC5
SOFTWARE
TYR A:736 , MET A:760 , HIS A:764 , GLU A:767 , HOH C:147 , SER C:733 , TYR C:735 , TYR C:736
BINDING SITE FOR RESIDUE DTT C 785
42
EC6
SOFTWARE
GOL B:6 , TYR D:401
BINDING SITE FOR RESIDUE GOL D 5
43
EC7
SOFTWARE
TYR D:736 , HIS D:764 , HOH D:789
BINDING SITE FOR RESIDUE GOL D 9
44
EC8
SOFTWARE
LYS B:766 , ARG B:782 , ASP D:434 , TYR D:459 , SER D:469 , TYR D:470
BINDING SITE FOR RESIDUE GOL D 26
45
EC9
SOFTWARE
ARG D:624 , TYR D:636 , LYS D:646
BINDING SITE FOR RESIDUE GOL D 27
46
FC1
SOFTWARE
LEU D:366 , ASN D:369 , ASP D:408 , SER D:409
BINDING SITE FOR RESIDUE GOL D 28
47
FC2
SOFTWARE
ASP B:372 , ASP B:373 , ARG D:234 , ASN D:254 , GLU D:255
BINDING SITE FOR RESIDUE MES D 4
48
FC3
SOFTWARE
ARG B:234 , ASN B:254 , GLU B:255 , ASP D:372 , ASP D:373 , LYS D:374 , HOH D:830
BINDING SITE FOR RESIDUE MES D 783
49
FC4
SOFTWARE
GLY D:486 , MET D:487 , GLN D:488 , GLU D:489
BINDING SITE FOR RESIDUE SO4 D 784
50
FC5
SOFTWARE
ARG D:399 , PRO D:400 , TYR D:401 , VAL D:402
BINDING SITE FOR RESIDUE SO4 D 785
51
FC6
SOFTWARE
HOH B:1145 , PHE D:398 , THR D:435 , TRP D:439 , HOH D:885 , HOH D:908
BINDING SITE FOR RESIDUE SO4 D 15
52
FC7
SOFTWARE
TRP A:187 , ARG D:234
BINDING SITE FOR RESIDUE SO4 D 16
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (855 KB)
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