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3NAY
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
PDK1 IN COMPLEX WITH INHIBITOR MP6
Authors
:
Y. Yan, S. K. Munshi, T. Allison
Date
:
02 Jun 10 (Deposition) - 24 Nov 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase, Serine/Threonine Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Nagashima, S. D. Shumway, S. Sathyanarayanan, A. Chen, B. Dolinski Y. Xu, H. Keilhack, T. Nguyen, M. Wiznerowicz, L. Li, B. A. Lutterbach, C. Paweletz, T. Allison, Y. Yan, S. K. Munshi, A. Klippel, M. Kraus, E. V. Bobkova, S. Deshmukh, Z. Xu, U. Mueller, A. A. Szewczak, B-S. Pan, V. Richon, R. Pollock, P. Blume-Jensen, A. Northrup, J. N. Andersen
Selective Inhibition Of Pdk1 Using An Allosteric Kinase Inhibitor And Rnai Impairs Cancer Cell Migration And Anchorage-Independent Growth Of Primary Tumor Lines
J. Biol. Chem. 2010
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 4-(2-CYCLOPROPYLETHYLIDENE)-9-(1H-... (MP6a)
1b: 4-(2-CYCLOPROPYLETHYLIDENE)-9-(1H-... (MP6b)
2a: PHOSPHOSERINE (SEPa)
2b: PHOSPHOSERINE (SEPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MP6
2
Ligand/Ion
4-(2-CYCLOPROPYLETHYLIDENE)-9-(1H-PYRAZOL-4-YL)-6-{[(1R)-1,2,2-TRIMETHYLPROPYL]AMINO}BENZO[C][1,6]NAPHTHYRIDIN-1(4H)-ONE
2
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:88 , GLU A:90 , VAL A:96 , ALA A:109 , LYS A:111 , GLU A:130 , SER A:160 , TYR A:161 , ALA A:162 , LYS A:163 , GLY A:165 , GLU A:209 , LEU A:212 , THR A:222
BINDING SITE FOR RESIDUE MP6 A 1
2
AC2
SOFTWARE
LEU B:88 , GLY B:89 , GLU B:90 , VAL B:96 , ALA B:109 , SER B:160 , ALA B:162 , LYS B:163 , GLY B:165 , GLU B:209 , ASN B:210 , LEU B:212 , THR B:222 , ASP B:223
BINDING SITE FOR RESIDUE MP6 B 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:88-111,B:88-111)
2: PROTEIN_KINASE_ST (A:201-213,B:201-213)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PDPK1_HUMAN
88-111
2
A:88-111
B:88-111
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PDPK1_HUMAN
201-213
2
A:201-213
B:201-213
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.6c (A:76-95 | B:76-95)
Exon 1.7 (A:96-110 | B:96-110)
Exon 1.8b (A:110-156 | B:110-156)
Exon 1.9b (A:156-204 | B:156-204)
Exon 1.10a (A:204-231 | B:204-231)
Exon 1.13 (A:240-262 | B:240-262)
Exon 1.14 (A:262-285 | B:262-285)
Exon 1.15b (A:285-317 | B:285-317)
Exon 1.16a (A:318-362 | B:318-362)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.6c
02: Boundary 1.6c/1.7
03: Boundary 1.7/1.8b
04: Boundary 1.8b/1.9b
05: Boundary 1.9b/1.10a
06: Boundary 1.10a/1.13
07: Boundary 1.13/1.14
08: Boundary 1.14/1.15b
09: Boundary 1.15b/1.16a
10: Boundary 1.16a/1.17
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000342085
1a
ENSE00001944688
chr16:
2587965-2588137
173
PDPK1_HUMAN
1-8
8
0
-
-
1.6c
ENST00000342085
6c
ENSE00001640744
chr16:
2607704-2607964
261
PDPK1_HUMAN
9-95
87
2
A:76-95
B:76-95
20
20
1.7
ENST00000342085
7
ENSE00001620065
chr16:
2611481-2611523
43
PDPK1_HUMAN
96-110
15
2
A:96-110
B:96-110
15
15
1.8b
ENST00000342085
8b
ENSE00001694535
chr16:
2611772-2611909
138
PDPK1_HUMAN
110-156
47
2
A:110-156
B:110-156
47
47
1.9b
ENST00000342085
9b
ENSE00001744256
chr16:
2615554-2615698
145
PDPK1_HUMAN
156-204
49
2
A:156-204
B:156-204
49
49
1.10a
ENST00000342085
10a
ENSE00001705748
chr16:
2616357-2616454
98
PDPK1_HUMAN
204-237
34
2
A:204-231
B:204-231
28
28
1.13
ENST00000342085
13
ENSE00001704745
chr16:
2627426-2627501
76
PDPK1_HUMAN
237-262
26
2
A:240-262
B:240-262
23
23
1.14
ENST00000342085
14
ENSE00001686272
chr16:
2631296-2631364
69
PDPK1_HUMAN
262-285
24
2
A:262-285
B:262-285
24
24
1.15b
ENST00000342085
15b
ENSE00001743545
chr16:
2631608-2631704
97
PDPK1_HUMAN
285-317
33
2
A:285-317
B:285-317
33
33
1.16a
ENST00000342085
16a
ENSE00001314244
chr16:
2633413-2633586
174
PDPK1_HUMAN
318-375
58
2
A:318-362
B:318-362
45
45
1.17
ENST00000342085
17
ENSE00000946017
chr16:
2636677-2636894
218
PDPK1_HUMAN
376-448
73
0
-
-
1.18
ENST00000342085
18
ENSE00000946018
chr16:
2645794-2645851
58
PDPK1_HUMAN
448-467
20
0
-
-
1.19
ENST00000342085
19
ENSE00000946019
chr16:
2647124-2647276
153
PDPK1_HUMAN
468-518
51
0
-
-
1.20b
ENST00000342085
20b
ENSE00001505218
chr16:
2647652-2653189
5538
PDPK1_HUMAN
519-556
38
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3naya_ (A:)
1b: SCOP_d3nayb_ (B:)
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)
(
)
Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
3-phosphoinositide dependent protein kinase-1 Pdk1
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3naya_
A:
1b
d3nayb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_3nayB01 (B:82-341)
1b: PFAM_Pkinase_3nayB02 (B:82-341)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3nayB01
B:82-341
1b
Pkinase-3nayB02
B:82-341
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