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3NAK
Biol. Unit 2
Info
Asym.Unit (210 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH HYPOTHIOCYANITE AT 3.3 A RESOLUTION
Authors
:
G. Vikram, R. P. Singh, A. K. Singh, M. Sinha, A. Bhushan, P. Kaur, S. Shar T. P. Singh
Date
:
02 Jun 10 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lactoperoxidase, Complex, Hypothiocyanite, Formate, Milk Protein, Metal Binding Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Vikram, R. P. Singh, A. K. Singh, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Goat Lactoperoxidase With Hypothiocyanite At 3. 3 A Resolution
To Be Published
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7a: 1-(OXIDOSULFANYL)METHANAMINE (OSMa)
7b: 1-(OXIDOSULFANYL)METHANAMINE (OSMb)
8a: PHOSPHOSERINE (SEPa)
8b: PHOSPHOSERINE (SEPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FMT
2
Ligand/Ion
FORMIC ACID
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
OSM
1
Ligand/Ion
1-(OXIDOSULFANYL)METHANAMINE
8
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(19, 19)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASN A:205 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:600 , HOH A:3007 , LEU B:206
BINDING SITE FOR RESIDUE NAG A 599
02
AC5
SOFTWARE
TRP A:220 , NAG A:599 , MAN A:601 , ARG B:204 , LEU B:206 , SER B:207
BINDING SITE FOR RESIDUE NAG A 600
03
AC7
SOFTWARE
ASN A:241 , TRP A:384 , LYS A:388 , NAG A:603 , PHE B:70
BINDING SITE FOR RESIDUE NAG A 602
04
BC8
SOFTWARE
ASN B:95 , ARG B:96 , ILE B:315 , ARG B:504 , GLN B:568 , NAG B:597
BINDING SITE FOR RESIDUE NAG B 596
05
BC9
SOFTWARE
ILE B:315 , HIS B:565 , NAG B:596 , MAN B:598
BINDING SITE FOR RESIDUE NAG B 597
06
CC1
SOFTWARE
NAG B:597
BINDING SITE FOR RESIDUE MAN B 598
07
CC2
SOFTWARE
ASN B:205 , SER B:208 , LEU B:210 , ALA B:214 , VAL B:215 , GLN B:217 , NAG B:600
BINDING SITE FOR RESIDUE NAG B 599
08
CC3
SOFTWARE
GLN B:217 , NAG B:599 , BMA B:601
BINDING SITE FOR RESIDUE NAG B 600
09
CC4
SOFTWARE
NAG B:600
BINDING SITE FOR RESIDUE BMA B 601
10
CC5
SOFTWARE
PHE A:70 , ASN B:241 , TRP B:384 , LYS B:388 , NAG B:603
BINDING SITE FOR RESIDUE NAG B 602
11
CC6
SOFTWARE
LYS A:485 , NAG B:602 , BMA B:604 , HOH B:3070
BINDING SITE FOR RESIDUE NAG B 603
12
CC7
SOFTWARE
NAG B:603
BINDING SITE FOR RESIDUE BMA B 604
13
CC8
SOFTWARE
ASN B:332 , SER B:334 , VAL B:335 , NAG B:606
BINDING SITE FOR RESIDUE NAG B 605
14
CC9
SOFTWARE
NAG B:605
BINDING SITE FOR RESIDUE NAG B 606
15
DC1
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
BINDING SITE FOR RESIDUE CA B 607
16
DC2
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , ARG B:255 , GLU B:258 , GLN B:259 , PHE B:347 , ARG B:348 , HIS B:351 , PHE B:380 , LEU B:417 , ARG B:440 , HOH B:3119 , OSM B:3333
BINDING SITE FOR RESIDUE HEM B 1003
17
DC3
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:1003
BINDING SITE FOR RESIDUE OSM B 3333
18
DC4
SOFTWARE
ARG B:397 , HIS B:558 , ILE B:559 , THR B:560
BINDING SITE FOR RESIDUE FMT B 2003
19
DC5
SOFTWARE
ALA B:44 , ARG B:45 , TRP B:46 , LEU B:47 , SER B:340 , ASN B:341 , VAL B:342 , TRP B:452
BINDING SITE FOR RESIDUE FMT B 2004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3nakB01 (B:21-567)
1b: PFAM_An_peroxidase_3nakB02 (B:21-567)
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Clans
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Families
(
)
(
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Organisms
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)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Capra hircus (Goat)
(6)
1a
An_peroxidase-3nakB01
B:21-567
1b
An_peroxidase-3nakB02
B:21-567
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Chain B
Asymmetric Unit 1
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Asym.Unit (210 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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