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3NAG
Biol. Unit 1
Info
Asym.Unit (106 KB)
Biol.Unit 1 (202 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) SYNTHETASE FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP
Authors
:
M. M. Cherney, L. T. Cherney, C. R. Garen, M. N. G. James
Date
:
02 Jun 10 (Deposition) - 08 Jun 11 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Phosphoribosyl Transferase, Adp Binding, Transferase
(Keyword Search:
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Reference
:
M. M. Cherney, L. T. Cherney, C. R. Garen, M. N. James
The Structures Of Thermoplasma Volcanium Phosphoribosyl Pyrophosphate Synthetase Bound To Ribose-5-Phosphate And At Analogs.
J. Mol. Biol. V. 413 844 2011
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
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No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:214 , THR A:215 , GLY A:216 , GLY A:217 , THR A:218 , HOH A:395 , HOH A:436
BINDING SITE FOR RESIDUE SO4 A 287
2
AC2
SOFTWARE
ARG A:7 , SER A:58 , ALA A:60 , HOH A:294 , HOH A:336 , HOH A:379
BINDING SITE FOR RESIDUE SO4 A 288
3
AC3
SOFTWARE
LYS A:11 , ARG A:15
BINDING SITE FOR RESIDUE SO4 A 289
4
AC4
SOFTWARE
PHE A:32 , ASP A:34 , GLU A:36 , HOH A:295 , ARG B:40 , ARG B:91 , GLN B:92 , HIS B:93 , TYR B:96 , MG B:287 , HOH B:388 , HOH B:389 , HOH B:400 , HOH B:414 , HOH B:522
BINDING SITE FOR RESIDUE ADP B 300
5
AC5
SOFTWARE
HIS B:124 , ADP B:300 , HOH B:355 , HOH B:389
BINDING SITE FOR RESIDUE MG B 287
6
AC6
SOFTWARE
ARG B:91 , ILE B:213 , SER B:214 , THR B:215 , GLY B:216 , GLY B:217 , THR B:218 , HOH B:332 , HOH B:468 , HOH B:474 , HOH B:510
BINDING SITE FOR RESIDUE SO4 B 288
7
AC7
SOFTWARE
ARG B:7 , SER B:58 , HOH B:352 , HOH B:530
BINDING SITE FOR RESIDUE SO4 B 289
8
AC8
SOFTWARE
LYS B:195 , ASN B:198 , LYS B:229 , HOH B:344 , HOH B:505
BINDING SITE FOR RESIDUE SO4 B 290
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3naga1 (A:1-155)
1b: SCOP_d3naga2 (A:156-284)
1c: SCOP_d3nagb1 (B:1-155)
1d: SCOP_d3nagb2 (B:156-286)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Thermoplasma volcanium [TaxId: 273116]
(1)
1a
d3naga1
A:1-155
1b
d3naga2
A:156-284
1c
d3nagb1
B:1-155
1d
d3nagb2
B:156-286
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Pribosyltran_3nagB01 (B:135-240)
1b: PFAM_Pribosyltran_3nagB02 (B:135-240)
2a: PFAM_Pribosyltran_N_3nagB03 (B:1-114)
2b: PFAM_Pribosyltran_N_3nagB04 (B:1-114)
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Clans
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Organisms
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)
(
)
Clan
:
PRTase-like
(59)
Family
:
Pribosyltran
(59)
Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
(4)
1a
Pribosyltran-3nagB01
B:135-240
1b
Pribosyltran-3nagB02
B:135-240
Clan
:
no clan defined [family: Pribosyltran_N]
(7)
Family
:
Pribosyltran_N
(7)
Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
(4)
2a
Pribosyltran_N-3nagB03
B:1-114
2b
Pribosyltran_N-3nagB04
B:1-114
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Asym.Unit (106 KB)
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