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3N9U
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE 25 KDA SUBUNIT AND THE 59 KDA SUBUNIT (RRM DOMAIN) OF HUMAN CLEAVAGE FACTOR IM
Authors
:
L. Tresaugues, M. Welin, C. H. Arrowsmith, H. Berglund, C. Bountra, R. C A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, I. Jo T. Karlberg, S. Kol, T. Kotenyova, M. Moche, T. N. Nielsen, T. Nyman, C. H. Schuler, P. Schutz, M. I. Siponen, A. G. Thorsell, S. Van Der Berg, E. Wahlberg, J. Weigelt, M. Wisniewska, P. Nordlund, Structural Gen Consortium (Sgc)
Date
:
31 May 10 (Deposition) - 21 Jul 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,C,I
Biol. Unit 1: A,B,C,I (1x)
Keywords
:
Protein-Protein Complex, Coexpression, Heterotetramer, Mrna Maturation, Polyadenylation, Mrna Cleavage, Cleavage And Polyadenylation Specificity Factor Subunit 5, Cleavage And Polyadenylation Specificity Factor Subunit 7, Pre-Mrna Cleavage Factor Im 25 Kda Subunit, Pre-Mrna Cleavage Factor Im 59 Kda Subunit, Nudix, Hydrolase, Rrm Domain, Nudt21, Cpsf5, Cpsf7, Structural Genomics, Structural Genomics Consortium, Sgc, Sgc Stockholm, Splicing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Tresaugues, M. Welin, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, I. Johansson, T. Karlberg, S. Kol, T. Kotenyova, M. Moche, T. K. Nielsen, T. Nyman, C. Persson, H. Schuler, P. Schutz, M. I. Siponen, A. G. Thorsell, S. Van Der Berg, E. Wahlberg, J. Weigelt, M. Wisniewska, P. Nordlund
Crystal Structure Of The Complex Between The 25 Kda Subunit And The 59 Kda Subunit (Rrm Domain) Of Human Cleavage Facto Im
To Be Published
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:81 , LYS A:105 , LEU A:106 , LYS A:172 , ILE A:211
BINDING SITE FOR RESIDUE GOL A 228
2
AC2
SOFTWARE
GLU B:81 , LYS B:105 , LEU B:106 , LYS B:172 , ILE B:211 , HOH B:267 , HOH B:313 , HOH B:317 , HOH B:326
BINDING SITE FOR RESIDUE GOL B 228
3
AC3
SOFTWARE
TYR A:202 , PRO B:156 , GLN B:157 , HOH B:391
BINDING SITE FOR RESIDUE GOL B 229
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:76-201,B:76-201)
2: RRM (C:82-162)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
CPSF5_HUMAN
76-201
2
A:76-201
B:76-201
2
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
CPSF7_HUMAN
82-162
1
C:82-162
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:22-39 | B:27-39)
Exon 1.2 (A:39-106 | B:39-106)
Exon 1.3 (A:106-127 | B:106-127)
Exon 1.4 (A:128-157 | B:128-157)
Exon 1.5 (A:158-183 | B:158-183)
Exon 1.6 (A:183-221 | B:183-221)
Exon 1.7 (A:221-227 | B:221-227)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000300291
1
ENSE00001482691
chr16:
56485287-56484999
289
CPSF5_HUMAN
1-39
39
2
A:22-39
B:27-39
18
13
1.2
ENST00000300291
2
ENSE00001108683
chr16:
56481901-56481701
201
CPSF5_HUMAN
39-106
68
2
A:39-106
B:39-106
68
68
1.3
ENST00000300291
3
ENSE00001108681
chr16:
56480601-56480538
64
CPSF5_HUMAN
106-127
22
2
A:106-127
B:106-127
22
22
1.4
ENST00000300291
4
ENSE00001108678
chr16:
56473658-56473569
90
CPSF5_HUMAN
128-157
30
2
A:128-157
B:128-157
30
30
1.5
ENST00000300291
5
ENSE00001108686
chr16:
56468741-56468666
76
CPSF5_HUMAN
158-183
26
2
A:158-183
B:158-183
26
26
1.6
ENST00000300291
6
ENSE00001108677
chr16:
56468357-56468243
115
CPSF5_HUMAN
183-221
39
2
A:183-221
B:183-221
39
39
1.7
ENST00000300291
7
ENSE00001108679
chr16:
56466645-56463045
3601
CPSF5_HUMAN
221-227
7
2
A:221-227
B:221-227
7
7
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NUDIX_2_3n9uB01 (B:35-222)
1b: PFAM_NUDIX_2_3n9uB02 (B:35-222)
2a: PFAM_RRM_1_3n9uI01 (I:84-156)
2b: PFAM_RRM_1_3n9uI02 (I:84-156)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
NUDIX
(85)
Family
:
NUDIX_2
(7)
Homo sapiens (Human)
(7)
1a
NUDIX_2-3n9uB01
B:35-222
1b
NUDIX_2-3n9uB02
B:35-222
Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
2a
RRM_1-3n9uI01
I:84-156
2b
RRM_1-3n9uI02
I:84-156
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Asymmetric Unit 1
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Asym.Unit (114 KB)
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