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3N8Y
Biol. Unit 1
Info
Asym.Unit (401 KB)
Biol.Unit 1 (389 KB)
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(1)
Title
:
STRUCTURE OF ASPIRIN ACETYLATED CYCLOOXYGENASE-1 IN COMPLEX WITH DICLOFENAC
Authors
:
R. S. Sidhu
Date
:
28 May 10 (Deposition) - 28 Jul 10 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cox-1, Cyclooxygenase, Peroxidase, Prostaglandin, Heme, Aspirin Acetylation, Diclofenac, Merohedral Twinned, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. S. Sidhu, J. Y. Lee, C. Yuan, W. L. Smith
Comparison Of Cyclooxygenase-1 Crystal Structures: Cross-Talk Between Monomers Comprising Cyclooxygenase-1 Homodimers
Biochemistry V. 49 7069 2010
[
close entry info
]
Hetero Components
(9, 29)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
2c: B-OCTYLGLUCOSIDE (BOGc)
2d: B-OCTYLGLUCOSIDE (BOGd)
3a: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFa)
3b: 2-[2,6-DICHLOROPHENYL)AMINO]BENZEN... (DIFb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
7c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
8a: O-ACETYLSERINE (OASa)
9a: 2-HYDROXYBENZOIC ACID (SALa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
7
Ligand/Ion
BETA-D-MANNOSE
2
BOG
4
Ligand/Ion
B-OCTYLGLUCOSIDE
3
DIF
2
Ligand/Ion
2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
3
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
8
OAS
1
Mod. Amino Acid
O-ACETYLSERINE
9
SAL
1
Ligand/Ion
2-HYDROXYBENZOIC ACID
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:22 , TYR A:148 , ALA A:199 , ALA A:202 , GLN A:203 , THR A:206 , PHE A:210 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , TRP A:387 , HIS A:388 , MET A:391
BINDING SITE FOR RESIDUE HEM A 601
02
AC2
SOFTWARE
VAL A:349 , LEU A:352 , SER A:353 , TYR A:355 , TYR A:385 , TRP A:387 , MET A:522 , ILE A:523 , GLY A:526 , ALA A:527 , SER A:530 , LEU A:531 , HOH A:608
BINDING SITE FOR RESIDUE DIF A 701
03
AC3
SOFTWARE
TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , NAG A:682 , GLY B:278 , ILE B:279
BINDING SITE FOR RESIDUE NAG A 681
04
AC4
SOFTWARE
GLN A:400 , GLN A:406 , ASP A:416 , NAG A:681 , BMA A:683 , GLN B:282
BINDING SITE FOR RESIDUE NAG A 682
05
AC5
SOFTWARE
GLN A:400 , NAG A:682 , BMA A:684
BINDING SITE FOR RESIDUE BMA A 683
06
AC6
SOFTWARE
HOH A:603 , BMA A:683
BINDING SITE FOR RESIDUE BMA A 684
07
AC7
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , NDG A:672 , LEU B:238
BINDING SITE FOR RESIDUE NAG A 671
08
AC8
SOFTWARE
MET A:216 , NAG A:671 , BMA A:673 , LEU B:238
BINDING SITE FOR RESIDUE NDG A 672
09
AC9
SOFTWARE
HOH A:624 , NDG A:672 , MAN A:674
BINDING SITE FOR RESIDUE BMA A 673
10
BC1
SOFTWARE
HOH A:624 , BMA A:673 , MAN A:675 , GLN B:243
BINDING SITE FOR RESIDUE MAN A 674
11
BC2
SOFTWARE
MAN A:674 , GLN B:243
BINDING SITE FOR RESIDUE MAN A 675
12
BC3
SOFTWARE
PRO A:84 , PRO A:86 , VAL A:119 , ARG A:120 , GLY A:471 , GLU A:524 , HOH A:621
BINDING SITE FOR RESIDUE BOG A 751
13
BC4
SOFTWARE
LEU A:82 , PRO A:84 , SER A:85
BINDING SITE FOR RESIDUE BOG A 754
14
BC5
SOFTWARE
ALA B:199 , GLN B:203 , HIS B:207 , PHE B:210 , THR B:212 , LEU B:295 , ASN B:382 , TYR B:385 , HIS B:386 , TRP B:387 , HIS B:388 , MET B:391 , VAL B:447
BINDING SITE FOR RESIDUE HEM B 601
15
BC6
SOFTWARE
TYR B:55 , ASN B:68 , HOH B:621 , NDG B:1662
BINDING SITE FOR RESIDUE NAG B 1661
16
BC7
SOFTWARE
TYR B:38 , ASP B:584 , NAG B:1661
BINDING SITE FOR RESIDUE NDG B 1662
17
BC8
SOFTWARE
TYR B:402 , GLN B:406 , ASN B:410 , SER B:412 , MET B:413 , ASP B:416 , TYR B:417 , NAG B:1682
BINDING SITE FOR RESIDUE NAG B 1681
18
BC9
SOFTWARE
ASP B:416 , NAG B:1681 , BMA B:1683
BINDING SITE FOR RESIDUE NAG B 1682
19
CC1
SOFTWARE
GLN B:400 , NAG B:1682 , BMA B:1684
BINDING SITE FOR RESIDUE BMA B 1683
20
CC2
SOFTWARE
GLN B:400 , BMA B:1683
BINDING SITE FOR RESIDUE BMA B 1684
21
CC3
SOFTWARE
LEU A:238 , ASN B:144 , TYR B:147 , NDG B:1672
BINDING SITE FOR RESIDUE NAG B 1671
22
CC4
SOFTWARE
LEU A:238 , TYR A:242 , MET B:216 , NAG B:1671 , BMA B:1673
BINDING SITE FOR RESIDUE NDG B 1672
23
CC5
SOFTWARE
NDG B:1672 , BMA B:1674
BINDING SITE FOR RESIDUE BMA B 1673
24
CC6
SOFTWARE
HOH B:596 , BMA B:1673
BINDING SITE FOR RESIDUE BMA B 1674
25
CC7
SOFTWARE
VAL B:349 , LEU B:352 , TYR B:355 , ALA B:527 , OAS B:530
BINDING SITE FOR RESIDUE SAL B 900
26
CC8
SOFTWARE
TYR B:348 , VAL B:349 , LEU B:352 , SER B:353 , TYR B:355 , TYR B:385 , TRP B:387 , MET B:522 , ILE B:523 , GLY B:526 , ALA B:527 , OAS B:530 , LEU B:531
BINDING SITE FOR RESIDUE DIF B 585
27
CC9
SOFTWARE
ARG B:83 , PRO B:84 , SER B:85 , SER B:87 , PHE B:88
BINDING SITE FOR RESIDUE BOG B 1750
28
DC1
SOFTWARE
HOH B:12 , ARG B:83 , PRO B:86 , ILE B:89 , VAL B:119 , ARG B:120 , LEU B:123 , GLU B:524
BINDING SITE FOR RESIDUE BOG B 1751
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R97H, chain A/B, )
2: VAR_PGH1_SHEEP_002 (G164G, chain A/B, )
3: VAR_PGH1_SHEEP_003 (R456Q, chain A/B, )
4: VAR_PGH1_SHEEP_004 (E520K, chain A/B, )
5: VAR_PGH1_SHEEP_005 (E520Q, chain A/B, )
6: VAR_PGH1_SHEEP_006 (M525I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
A/B
R
97
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
A/B
G
164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
A/B
R
456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
A/B
E
520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
A/B
E
520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
A/B
M
525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:32-70,B:32-70)
2: PEROXIDASE_3 (A:110-584,B:110-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
2
A:32-70
B:32-70
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
2
A:110-584
B:110-584
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3n8ya2 (A:74-584)
1b: SCOP_d3n8yb2 (B:74-584)
2a: SCOP_d3n8ya1 (A:32-73)
2b: SCOP_d3n8yb1 (B:32-73)
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)
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(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
1a
d3n8ya2
A:74-584
1b
d3n8yb2
B:74-584
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
2a
d3n8ya1
A:32-73
2b
d3n8yb1
B:32-73
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3n8yB01 (B:142-582)
1b: PFAM_An_peroxidase_3n8yB02 (B:142-582)
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Clans
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Ovis aries (Sheep)
(15)
1a
An_peroxidase-3n8yB01
B:142-582
1b
An_peroxidase-3n8yB02
B:142-582
[
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]
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Asymmetric Unit 1
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