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3N83
Biol. Unit 2
Info
Asym.Unit (687 KB)
Biol.Unit 1 (343 KB)
Biol.Unit 2 (345 KB)
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(1)
Title
:
T244A MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, NAD COMPLEX
Authors
:
L. Gonzalez-Segura, T. D. Hurley
Date
:
27 May 10 (Deposition) - 13 Apr 11 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -K. Ho, L. Gonzalez-Segura, S. Perez-Miller, H. Weiner, T. D. Hurle
Conformational Selection During Catalysis: The Role Of Threonine 244 In Aldh2
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
3a: GUANIDINE (GAIa)
3b: GUANIDINE (GAIb)
3c: GUANIDINE (GAIc)
3d: GUANIDINE (GAId)
3e: GUANIDINE (GAIe)
3f: GUANIDINE (GAIf)
3g: GUANIDINE (GAIg)
3h: GUANIDINE (GAIh)
3i: GUANIDINE (GAIi)
3j: GUANIDINE (GAIj)
3k: GUANIDINE (GAIk)
3l: GUANIDINE (GAIl)
3m: GUANIDINE (GAIm)
3n: GUANIDINE (GAIn)
3o: GUANIDINE (GAIo)
3p: GUANIDINE (GAIp)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
GAI
9
Ligand/Ion
GUANIDINE
4
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: BC9 (SOFTWARE)
02: CC7 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC2 (SOFTWARE)
15: EC3 (SOFTWARE)
16: EC4 (SOFTWARE)
17: EC5 (SOFTWARE)
18: EC6 (SOFTWARE)
19: EC7 (SOFTWARE)
20: EC8 (SOFTWARE)
21: EC9 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC2 (SOFTWARE)
24: FC3 (SOFTWARE)
25: FC4 (SOFTWARE)
26: FC5 (SOFTWARE)
27: FC6 (SOFTWARE)
28: FC7 (SOFTWARE)
29: FC8 (SOFTWARE)
30: FC9 (SOFTWARE)
31: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC9
SOFTWARE
GLU C:347 , PHE C:350 , GLY F:45 , VAL F:47
BINDING SITE FOR RESIDUE EDO C 963
02
CC7
SOFTWARE
GLU D:414 , TYR D:441 , HOH D:1236 , LYS G:361
BINDING SITE FOR RESIDUE EDO D 944
03
CC9
SOFTWARE
THR E:39 , VAL E:40 , ASP E:109 , GLN E:196 , HOH E:1520
BINDING SITE FOR RESIDUE NA E 705
04
DC1
SOFTWARE
PHE E:70 , GLU E:157 , PRO E:158 , VAL E:159 , HOH E:978 , TYR F:468
BINDING SITE FOR RESIDUE GAI E 805
05
DC2
SOFTWARE
ILE E:146 , ASP E:147 , PHE E:150 , HOH E:1524 , VAL F:458 , PHE F:459
BINDING SITE FOR RESIDUE GAI E 815
06
DC3
SOFTWARE
TYR E:153 , ARG E:155 , HOH E:2688 , SER F:443 , PHE H:151
BINDING SITE FOR RESIDUE EDO E 905
07
DC4
SOFTWARE
ASN E:41 , THR E:44 , VAL E:47
BINDING SITE FOR RESIDUE EDO E 915
08
DC5
SOFTWARE
ILE E:165 , ILE E:166 , PRO E:167 , TRP E:168 , LYS E:192 , ALA E:194 , GLU E:195 , GLN E:196 , GLY E:225 , GLY E:229 , ALA E:230 , PHE E:243 , ALA E:244 , GLY E:245 , SER E:246 , ILE E:249 , ILE E:253 , HOH E:777 , HOH E:849 , HOH E:1771 , HOH E:2183
BINDING SITE FOR RESIDUE ADP E 505
09
DC6
SOFTWARE
THR F:39 , VAL F:40 , ASP F:109 , GLN F:196 , HOH F:2178
BINDING SITE FOR RESIDUE NA F 706
10
DC7
SOFTWARE
TYR E:468 , GLU F:157 , PRO F:158 , VAL F:159 , HOH F:521
BINDING SITE FOR RESIDUE GAI F 806
11
DC8
SOFTWARE
PHE E:459 , ILE F:146 , ASP F:147 , PHE F:150 , HOH F:2283 , HOH F:2585
BINDING SITE FOR RESIDUE GAI F 816
12
DC9
SOFTWARE
PHE F:350 , ALA F:375 , ASP F:376 , GLY F:378 , EDO F:966 , HOH F:1775
BINDING SITE FOR RESIDUE GAI F 826
13
EC1
SOFTWARE
SER E:443 , TYR F:153 , ARG F:155 , PHE G:151
BINDING SITE FOR RESIDUE EDO F 906
14
EC2
SOFTWARE
ASN F:41 , THR F:44 , GLU F:46 , LEU F:108 , HOH F:942 , HOH F:1529
BINDING SITE FOR RESIDUE EDO F 916
15
EC3
SOFTWARE
ARG E:321 , PHE F:18 , TYR F:101 , TYR F:203 , HOH F:2455
BINDING SITE FOR RESIDUE EDO F 926
16
EC4
SOFTWARE
LEU E:72 , TYR F:441 , GLN F:444 , ALA F:445 , HOH F:703 , HOH F:1385 , GLN H:497
BINDING SITE FOR RESIDUE EDO F 946
17
EC5
SOFTWARE
GLY C:45 , GLU F:347 , GAI F:826
BINDING SITE FOR RESIDUE EDO F 966
18
EC6
SOFTWARE
ILE F:165 , ILE F:166 , PRO F:167 , TRP F:168 , LYS F:192 , ALA F:194 , GLU F:195 , GLY F:225 , GLY F:229 , ALA F:230 , PHE F:243 , ALA F:244 , GLY F:245 , SER F:246 , ILE F:249 , ILE F:253 , HOH F:624 , HOH F:1263 , HOH F:2220
BINDING SITE FOR RESIDUE ADP F 506
19
EC7
SOFTWARE
THR G:39 , VAL G:40 , ASP G:109 , GLN G:196 , HOH G:1840
BINDING SITE FOR RESIDUE NA G 707
20
EC8
SOFTWARE
GLU G:157 , PRO G:158 , VAL G:159 , HOH G:1429 , HOH G:2513 , TYR H:468
BINDING SITE FOR RESIDUE GAI G 807
21
EC9
SOFTWARE
ASP G:147 , PHE G:150 , HOH G:2529 , VAL H:458 , PHE H:459
BINDING SITE FOR RESIDUE GAI G 817
22
FC1
SOFTWARE
ALA G:326 , LYS G:327 , ARG G:329 , VAL G:331 , PRO G:383 , HOH G:1323
BINDING SITE FOR RESIDUE GAI G 838
23
FC2
SOFTWARE
PHE F:151 , TYR G:153 , ARG G:155 , SER H:443
BINDING SITE FOR RESIDUE EDO G 907
24
FC3
SOFTWARE
ASN G:41 , THR G:44 , GLU G:46 , HOH G:2835
BINDING SITE FOR RESIDUE EDO G 917
25
FC4
SOFTWARE
PHE G:18 , TYR G:101 , TYR G:203 , HOH G:1376
BINDING SITE FOR RESIDUE EDO G 927
26
FC5
SOFTWARE
ILE G:165 , ILE G:166 , PRO G:167 , TRP G:168 , LYS G:192 , ALA G:194 , GLU G:195 , GLN G:196 , GLY G:225 , GLY G:229 , ALA G:230 , PHE G:243 , ALA G:244 , GLY G:245 , SER G:246 , ILE G:249 , ILE G:253 , HOH G:1281 , HOH G:1338 , HOH G:1973 , HOH G:2740
BINDING SITE FOR RESIDUE ADP G 507
27
FC6
SOFTWARE
THR H:39 , VAL H:40 , ASP H:109 , GLN H:196
BINDING SITE FOR RESIDUE NA H 708
28
FC7
SOFTWARE
TYR G:468 , GLU H:157 , PRO H:158 , VAL H:159 , HOH H:2112 , HOH H:2242
BINDING SITE FOR RESIDUE GAI H 808
29
FC8
SOFTWARE
PHE E:151 , SER G:443 , TYR H:153 , ARG H:155
BINDING SITE FOR RESIDUE EDO H 908
30
FC9
SOFTWARE
TYR H:101 , TYR H:203
BINDING SITE FOR RESIDUE EDO H 928
31
GC1
SOFTWARE
ILE H:165 , ILE H:166 , PRO H:167 , TRP H:168 , LYS H:192 , GLU H:195 , GLN H:196 , GLY H:225 , GLY H:229 , ALA H:230 , PHE H:243 , ALA H:244 , GLY H:245 , SER H:246 , ILE H:249 , ILE H:253 , HOH H:1289 , HOH H:1482 , HOH H:2245 , HOH H:2279
BINDING SITE FOR RESIDUE ADP H 508
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011869 (E320V, chain E/F/G/H, )
2: VAR_011302 (E479K, chain E/F/G/H, )
3: VAR_002248 (E487K, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
E/F/G/H
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
E/F/G/H
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
E/F/G/H
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (E:267-274,F:267-274,G:267-274,H:26...)
2: ALDEHYDE_DEHYDR_CYS (E:295-306,F:295-306,G:295-306,H:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
4
-
-
-
-
E:267-274
F:267-274
G:267-274
H:267-274
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
4
-
-
-
-
E:295-306
F:295-306
G:295-306
H:295-306
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3n83a_ (A:)
1b: SCOP_d3n83b_ (B:)
1c: SCOP_d3n83c_ (C:)
1d: SCOP_d3n83d_ (D:)
1e: SCOP_d3n83e_ (E:)
1f: SCOP_d3n83f_ (F:)
1g: SCOP_d3n83g_ (G:)
1h: SCOP_d3n83h_ (H:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d3n83a_
A:
1b
d3n83b_
B:
1c
d3n83c_
C:
1d
d3n83d_
D:
1e
d3n83e_
E:
1f
d3n83f_
F:
1g
d3n83g_
G:
1h
d3n83h_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3n83H01 (H:28-491)
1b: PFAM_Aldedh_3n83H02 (H:28-491)
1c: PFAM_Aldedh_3n83H03 (H:28-491)
1d: PFAM_Aldedh_3n83H04 (H:28-491)
1e: PFAM_Aldedh_3n83H05 (H:28-491)
1f: PFAM_Aldedh_3n83H06 (H:28-491)
1g: PFAM_Aldedh_3n83H07 (H:28-491)
1h: PFAM_Aldedh_3n83H08 (H:28-491)
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Clans
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-3n83H01
H:28-491
1b
Aldedh-3n83H02
H:28-491
1c
Aldedh-3n83H03
H:28-491
1d
Aldedh-3n83H04
H:28-491
1e
Aldedh-3n83H05
H:28-491
1f
Aldedh-3n83H06
H:28-491
1g
Aldedh-3n83H07
H:28-491
1h
Aldedh-3n83H08
H:28-491
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