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3N83
Biol. Unit 1
Info
Asym.Unit (687 KB)
Biol.Unit 1 (343 KB)
Biol.Unit 2 (345 KB)
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(1)
Title
:
T244A MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, NAD COMPLEX
Authors
:
L. Gonzalez-Segura, T. D. Hurley
Date
:
27 May 10 (Deposition) - 13 Apr 11 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -K. Ho, L. Gonzalez-Segura, S. Perez-Miller, H. Weiner, T. D. Hurle
Conformational Selection During Catalysis: The Role Of Threonine 244 In Aldh2
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 22)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
3a: GUANIDINE (GAIa)
3b: GUANIDINE (GAIb)
3c: GUANIDINE (GAIc)
3d: GUANIDINE (GAId)
3e: GUANIDINE (GAIe)
3f: GUANIDINE (GAIf)
3g: GUANIDINE (GAIg)
3h: GUANIDINE (GAIh)
3i: GUANIDINE (GAIi)
3j: GUANIDINE (GAIj)
3k: GUANIDINE (GAIk)
3l: GUANIDINE (GAIl)
3m: GUANIDINE (GAIm)
3n: GUANIDINE (GAIn)
3o: GUANIDINE (GAIo)
3p: GUANIDINE (GAIp)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
GAI
7
Ligand/Ion
GUANIDINE
4
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196
BINDING SITE FOR RESIDUE NA A 701
02
AC2
SOFTWARE
PHE A:70 , GLU A:157 , PRO A:158 , VAL A:159 , HOH A:991 , HOH A:1322 , TYR B:468
BINDING SITE FOR RESIDUE GAI A 801
03
AC3
SOFTWARE
TYR A:153 , ARG A:155 , HOH A:2135 , SER B:443 , PHE D:151
BINDING SITE FOR RESIDUE EDO A 901
04
AC4
SOFTWARE
GLN A:14 , ASN A:41 , THR A:44 , GLU A:46 , ILE A:48 , LEU A:108
BINDING SITE FOR RESIDUE EDO A 911
05
AC5
SOFTWARE
PHE A:18 , TYR A:101 , TYR A:203 , HOH A:1400
BINDING SITE FOR RESIDUE EDO A 921
06
AC6
SOFTWARE
ILE A:165 , ILE A:166 , PRO A:167 , TRP A:168 , LYS A:192 , ALA A:194 , GLU A:195 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , ALA A:244 , GLY A:245 , SER A:246 , ILE A:249 , ILE A:253
BINDING SITE FOR RESIDUE ADP A 501
07
AC7
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:1336
BINDING SITE FOR RESIDUE NA B 702
08
AC8
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159
BINDING SITE FOR RESIDUE GAI B 802
09
AC9
SOFTWARE
PHE A:459 , HOH A:956 , HOH A:1058 , ILE B:146 , ASP B:147 , PHE B:150 , HOH B:2548
BINDING SITE FOR RESIDUE GAI B 812
10
BC1
SOFTWARE
SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
BINDING SITE FOR RESIDUE EDO B 902
11
BC2
SOFTWARE
GLN B:14 , ASN B:41 , THR B:44
BINDING SITE FOR RESIDUE EDO B 912
12
BC3
SOFTWARE
ILE B:165 , ILE B:166 , PRO B:167 , TRP B:168 , LYS B:192 , GLU B:195 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , ALA B:244 , GLY B:245 , SER B:246 , ILE B:249 , ILE B:253 , HOH B:2638
BINDING SITE FOR RESIDUE ADP B 502
13
BC4
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:526
BINDING SITE FOR RESIDUE NA C 703
14
BC5
SOFTWARE
PHE C:70 , GLU C:157 , PRO C:158 , VAL C:159 , HOH C:610 , TYR D:468
BINDING SITE FOR RESIDUE GAI C 803
15
BC6
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , SER D:443
BINDING SITE FOR RESIDUE EDO C 903
16
BC7
SOFTWARE
GLN C:14 , ASN C:41 , THR C:44 , GLU C:46
BINDING SITE FOR RESIDUE EDO C 913
17
BC8
SOFTWARE
PHE C:18 , TYR C:101 , TYR C:203 , HOH C:1692
BINDING SITE FOR RESIDUE EDO C 923
18
BC9
SOFTWARE
GLU C:347 , PHE C:350 , GLY F:45 , VAL F:47
BINDING SITE FOR RESIDUE EDO C 963
19
CC1
SOFTWARE
ILE C:165 , ILE C:166 , PRO C:167 , TRP C:168 , LYS C:192 , ALA C:194 , GLU C:195 , GLN C:196 , GLY C:225 , GLY C:229 , ALA C:230 , PHE C:243 , ALA C:244 , GLY C:245 , SER C:246 , ILE C:249 , ILE C:253 , GLN C:349 , HOH C:543 , HOH C:1399 , HOH C:2287
BINDING SITE FOR RESIDUE ADP C 503
20
CC2
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:1571
BINDING SITE FOR RESIDUE NA D 704
21
CC3
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159
BINDING SITE FOR RESIDUE GAI D 804
22
CC4
SOFTWARE
PHE C:459 , ILE D:146 , ASP D:147 , PHE D:150 , HOH D:1444
BINDING SITE FOR RESIDUE GAI D 814
23
CC5
SOFTWARE
ALA D:326 , LYS D:327 , ARG D:329 , VAL D:331 , PRO D:383 , HOH D:1753
BINDING SITE FOR RESIDUE GAI D 833
24
CC6
SOFTWARE
PHE A:151 , SER C:443 , TYR D:153 , ARG D:155 , HOH D:2262
BINDING SITE FOR RESIDUE EDO D 904
25
CC7
SOFTWARE
GLU D:414 , TYR D:441 , HOH D:1236 , LYS G:361
BINDING SITE FOR RESIDUE EDO D 944
26
CC8
SOFTWARE
ILE D:165 , ILE D:166 , PRO D:167 , TRP D:168 , LYS D:192 , ALA D:194 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , ALA D:244 , GLY D:245 , SER D:246 , ILE D:249 , ILE D:253 , HOH D:1357 , HOH D:1698 , HOH D:2234
BINDING SITE FOR RESIDUE ADP D 504
27
EC5
SOFTWARE
GLY C:45 , GLU F:347 , GAI F:826
BINDING SITE FOR RESIDUE EDO F 966
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011869 (E320V, chain A/B/C/D, )
2: VAR_011302 (E479K, chain A/B/C/D, )
3: VAR_002248 (E487K, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
A/B/C/D
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
A/B/C/D
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
A/B/C/D
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:267-274,B:267-274,C:267-274,D:26...)
2: ALDEHYDE_DEHYDR_CYS (A:295-306,B:295-306,C:295-306,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
4
A:267-274
B:267-274
C:267-274
D:267-274
-
-
-
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
4
A:295-306
B:295-306
C:295-306
D:295-306
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3n83a_ (A:)
1b: SCOP_d3n83b_ (B:)
1c: SCOP_d3n83c_ (C:)
1d: SCOP_d3n83d_ (D:)
1e: SCOP_d3n83e_ (E:)
1f: SCOP_d3n83f_ (F:)
1g: SCOP_d3n83g_ (G:)
1h: SCOP_d3n83h_ (H:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d3n83a_
A:
1b
d3n83b_
B:
1c
d3n83c_
C:
1d
d3n83d_
D:
1e
d3n83e_
E:
1f
d3n83f_
F:
1g
d3n83g_
G:
1h
d3n83h_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3n83H01 (H:28-491)
1b: PFAM_Aldedh_3n83H02 (H:28-491)
1c: PFAM_Aldedh_3n83H03 (H:28-491)
1d: PFAM_Aldedh_3n83H04 (H:28-491)
1e: PFAM_Aldedh_3n83H05 (H:28-491)
1f: PFAM_Aldedh_3n83H06 (H:28-491)
1g: PFAM_Aldedh_3n83H07 (H:28-491)
1h: PFAM_Aldedh_3n83H08 (H:28-491)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-3n83H01
H:28-491
1b
Aldedh-3n83H02
H:28-491
1c
Aldedh-3n83H03
H:28-491
1d
Aldedh-3n83H04
H:28-491
1e
Aldedh-3n83H05
H:28-491
1f
Aldedh-3n83H06
H:28-491
1g
Aldedh-3n83H07
H:28-491
1h
Aldedh-3n83H08
H:28-491
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Asym.Unit (687 KB)
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