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3N82
Biol. Unit 2
Info
Asym.Unit (681 KB)
Biol.Unit 1 (342 KB)
Biol.Unit 2 (340 KB)
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(1)
Title
:
T244A MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, NADH COMPLEX
Authors
:
L. Gonzalez-Segura, T. D. Hurley
Date
:
27 May 10 (Deposition) - 13 Apr 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -K. Ho, L. Gonzalez-Segura, S. Perez-Miller, H. Weiner, T. D. Hurle
Conformational Selection During Catalysis: The Role Of Threonine 244 In Aldh2
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
2a: GUANIDINE (GAIa)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
2i: GUANIDINE (GAIi)
2j: GUANIDINE (GAIj)
2k: GUANIDINE (GAIk)
2l: GUANIDINE (GAIl)
2m: GUANIDINE (GAIm)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
5e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
5f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
5g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
5h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
2
GAI
7
Ligand/Ion
GUANIDINE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: CC3 (SOFTWARE)
02: DC1 (SOFTWARE)
03: DC3 (SOFTWARE)
04: DC4 (SOFTWARE)
05: DC5 (SOFTWARE)
06: DC6 (SOFTWARE)
07: DC7 (SOFTWARE)
08: DC8 (SOFTWARE)
09: DC9 (SOFTWARE)
10: EC1 (SOFTWARE)
11: EC2 (SOFTWARE)
12: EC3 (SOFTWARE)
13: EC4 (SOFTWARE)
14: EC5 (SOFTWARE)
15: EC6 (SOFTWARE)
16: EC7 (SOFTWARE)
17: EC8 (SOFTWARE)
18: EC9 (SOFTWARE)
19: FC1 (SOFTWARE)
20: FC2 (SOFTWARE)
21: FC3 (SOFTWARE)
22: FC4 (SOFTWARE)
23: FC5 (SOFTWARE)
24: FC6 (SOFTWARE)
25: FC7 (SOFTWARE)
26: FC8 (SOFTWARE)
27: FC9 (SOFTWARE)
28: GC1 (SOFTWARE)
29: GC2 (SOFTWARE)
30: GC3 (SOFTWARE)
31: GC4 (SOFTWARE)
32: GC5 (SOFTWARE)
33: GC6 (SOFTWARE)
34: GC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC3
SOFTWARE
GLU C:347 , PHE C:350 , GLY F:45
BINDING SITE FOR RESIDUE EDO C 963
02
DC1
SOFTWARE
GLU D:414 , VAL D:417 , TYR D:441 , LYS G:361 , HOH G:2498
BINDING SITE FOR RESIDUE EDO D 944
03
DC3
SOFTWARE
NAD E:505
BINDING SITE FOR RESIDUE MG E 605
04
DC4
SOFTWARE
THR E:39 , VAL E:40 , ASP E:109 , GLN E:196 , HOH E:1984
BINDING SITE FOR RESIDUE NA E 705
05
DC5
SOFTWARE
GLU E:157 , PRO E:158 , VAL E:159 , HOH E:692 , GLN F:447 , TYR F:468
BINDING SITE FOR RESIDUE GAI E 805
06
DC6
SOFTWARE
ILE E:146 , ASP E:147 , PHE E:150 , PHE F:459
BINDING SITE FOR RESIDUE GAI E 815
07
DC7
SOFTWARE
TYR E:153 , ARG E:155 , HOH E:1643 , SER F:443 , PHE H:151
BINDING SITE FOR RESIDUE EDO E 905
08
DC8
SOFTWARE
ASN E:41 , THR E:44 , GLU E:46 , ILE E:48
BINDING SITE FOR RESIDUE EDO E 915
09
DC9
SOFTWARE
PHE E:18 , TYR E:101 , TYR E:203
BINDING SITE FOR RESIDUE EDO E 925
10
EC1
SOFTWARE
ILE E:165 , ILE E:166 , PRO E:167 , TRP E:168 , ASN E:169 , LYS E:192 , GLU E:195 , GLN E:196 , GLY E:225 , GLY E:229 , ALA E:230 , PHE E:243 , GLY E:245 , SER E:246 , ILE E:249 , ILE E:253 , GLU E:268 , LEU E:269 , CYS E:302 , GLN E:349 , GLU E:399 , PHE E:401 , MG E:605 , HOH E:867 , HOH E:1014 , HOH E:1284 , HOH E:1324 , HOH E:1763
BINDING SITE FOR RESIDUE NAD E 505
11
EC2
SOFTWARE
NAD F:506 , HOH F:2345
BINDING SITE FOR RESIDUE MG F 606
12
EC3
SOFTWARE
THR F:39 , VAL F:40 , ASP F:109 , GLN F:196 , HOH F:1585
BINDING SITE FOR RESIDUE NA F 706
13
EC4
SOFTWARE
TYR E:468 , GLU F:157 , PRO F:158 , VAL F:159 , HOH F:1990
BINDING SITE FOR RESIDUE GAI F 806
14
EC5
SOFTWARE
ASP F:376 , GLY F:378 , EDO F:966 , HOH F:1836
BINDING SITE FOR RESIDUE GAI F 826
15
EC6
SOFTWARE
SER E:443 , TYR F:153 , ARG F:155 , PHE G:151
BINDING SITE FOR RESIDUE EDO F 906
16
EC7
SOFTWARE
ASN F:41 , THR F:44 , GLU F:46 , LEU F:108 , HOH F:2533
BINDING SITE FOR RESIDUE EDO F 916
17
EC8
SOFTWARE
ARG E:321 , HOH E:1754 , TYR F:101 , TYR F:203 , HOH F:972
BINDING SITE FOR RESIDUE EDO F 926
18
EC9
SOFTWARE
LEU E:72 , TYR F:441 , GLN F:444 , ALA F:445 , HOH F:884 , GLN H:497 , ASN H:499
BINDING SITE FOR RESIDUE EDO F 946
19
FC1
SOFTWARE
GLY C:45 , GLU F:347 , PHE F:350 , GAI F:826
BINDING SITE FOR RESIDUE EDO F 966
20
FC2
SOFTWARE
ILE F:165 , ILE F:166 , PRO F:167 , TRP F:168 , LYS F:192 , ALA F:194 , GLU F:195 , GLN F:196 , GLY F:225 , GLY F:229 , ALA F:230 , PHE F:243 , GLY F:245 , SER F:246 , ILE F:249 , ILE F:253 , GLU F:268 , LEU F:269 , CYS F:302 , GLN F:349 , LYS F:352 , GLU F:399 , MG F:606 , HOH F:1145 , HOH F:1192 , HOH F:1853 , HOH F:2445
BINDING SITE FOR RESIDUE NAD F 506
21
FC3
SOFTWARE
NAD G:507
BINDING SITE FOR RESIDUE MG G 607
22
FC4
SOFTWARE
THR G:39 , VAL G:40 , ASP G:109 , GLN G:196 , HOH G:2465
BINDING SITE FOR RESIDUE NA G 707
23
FC5
SOFTWARE
GLU G:157 , PRO G:158 , VAL G:159 , HOH G:738 , GLN H:447
BINDING SITE FOR RESIDUE GAI G 807
24
FC6
SOFTWARE
ASP G:147 , GLY G:148 , PHE G:150 , VAL H:458 , PHE H:459
BINDING SITE FOR RESIDUE GAI G 817
25
FC7
SOFTWARE
PHE F:151 , TYR G:153 , ARG G:155 , SER H:443
BINDING SITE FOR RESIDUE EDO G 907
26
FC8
SOFTWARE
ASN G:41 , THR G:44 , GLU G:46
BINDING SITE FOR RESIDUE EDO G 917
27
FC9
SOFTWARE
TYR G:101 , TYR G:203
BINDING SITE FOR RESIDUE EDO G 927
28
GC1
SOFTWARE
ILE G:165 , ILE G:166 , PRO G:167 , TRP G:168 , LYS G:192 , ALA G:194 , GLU G:195 , GLN G:196 , GLY G:225 , GLY G:229 , ALA G:230 , PHE G:243 , GLY G:245 , SER G:246 , ILE G:249 , ILE G:253 , GLU G:268 , LEU G:269 , CYS G:302 , GLN G:349 , GLU G:399 , PHE G:401 , MG G:607 , HOH G:751 , HOH G:1520 , HOH G:1965 , HOH G:2225
BINDING SITE FOR RESIDUE NAD G 507
29
GC2
SOFTWARE
NAD H:508
BINDING SITE FOR RESIDUE MG H 608
30
GC3
SOFTWARE
THR H:39 , VAL H:40 , ASP H:109 , GLN H:196 , HOH H:1571
BINDING SITE FOR RESIDUE NA H 708
31
GC4
SOFTWARE
TYR G:468 , GLU H:157 , PRO H:158 , VAL H:159
BINDING SITE FOR RESIDUE GAI H 808
32
GC5
SOFTWARE
PHE E:151 , ASN G:440 , SER G:443 , TYR H:153 , ARG H:155
BINDING SITE FOR RESIDUE EDO H 908
33
GC6
SOFTWARE
LYS E:361 , TYR H:101 , TYR H:203
BINDING SITE FOR RESIDUE EDO H 928
34
GC7
SOFTWARE
ILE H:165 , ILE H:166 , PRO H:167 , TRP H:168 , LYS H:192 , ALA H:194 , GLU H:195 , GLN H:196 , GLY H:225 , GLY H:229 , ALA H:230 , PHE H:243 , GLY H:245 , SER H:246 , ILE H:249 , ILE H:253 , GLU H:268 , LEU H:269 , CYS H:302 , GLN H:349 , LYS H:352 , GLU H:399 , PHE H:401 , MG H:608 , HOH H:1258 , HOH H:1261
BINDING SITE FOR RESIDUE NAD H 508
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011869 (E320V, chain E/F/G/H, )
2: VAR_011302 (E479K, chain E/F/G/H, )
3: VAR_002248 (E487K, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
E/F/G/H
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
E/F/G/H
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
E/F/G/H
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (E:267-274,F:267-274,G:267-274,H:26...)
2: ALDEHYDE_DEHYDR_CYS (E:295-306,F:295-306,G:295-306,H:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
4
-
-
-
-
E:267-274
F:267-274
G:267-274
H:267-274
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
4
-
-
-
-
E:295-306
F:295-306
G:295-306
H:295-306
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3n82a_ (A:)
1b: SCOP_d3n82b_ (B:)
1c: SCOP_d3n82c_ (C:)
1d: SCOP_d3n82d_ (D:)
1e: SCOP_d3n82e_ (E:)
1f: SCOP_d3n82f_ (F:)
1g: SCOP_d3n82g_ (G:)
1h: SCOP_d3n82h_ (H:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d3n82a_
A:
1b
d3n82b_
B:
1c
d3n82c_
C:
1d
d3n82d_
D:
1e
d3n82e_
E:
1f
d3n82f_
F:
1g
d3n82g_
G:
1h
d3n82h_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3n82H01 (H:28-491)
1b: PFAM_Aldedh_3n82H02 (H:28-491)
1c: PFAM_Aldedh_3n82H03 (H:28-491)
1d: PFAM_Aldedh_3n82H04 (H:28-491)
1e: PFAM_Aldedh_3n82H05 (H:28-491)
1f: PFAM_Aldedh_3n82H06 (H:28-491)
1g: PFAM_Aldedh_3n82H07 (H:28-491)
1h: PFAM_Aldedh_3n82H08 (H:28-491)
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(
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(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-3n82H01
H:28-491
1b
Aldedh-3n82H02
H:28-491
1c
Aldedh-3n82H03
H:28-491
1d
Aldedh-3n82H04
H:28-491
1e
Aldedh-3n82H05
H:28-491
1f
Aldedh-3n82H06
H:28-491
1g
Aldedh-3n82H07
H:28-491
1h
Aldedh-3n82H08
H:28-491
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