PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3N81
Biol. Unit 1
Info
Asym.Unit (697 KB)
Biol.Unit 1 (349 KB)
Biol.Unit 2 (350 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
T244A MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, APO FORM
Authors
:
L. Gonzalez-Segura, T. D. Hurley
Date
:
27 May 10 (Deposition) - 13 Apr 11 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -K. Ho, L. Gonzalez-Segura, S. Perez-Miller, H. Weiner, T. D. Hurle
Conformational Selection During Catalysis: The Role Of Threonine 244 In Aldh2
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 23)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GUANIDINE (GAIa)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
2i: GUANIDINE (GAIi)
2j: GUANIDINE (GAIj)
2k: GUANIDINE (GAIk)
2l: GUANIDINE (GAIl)
2m: GUANIDINE (GAIm)
2n: GUANIDINE (GAIn)
2o: GUANIDINE (GAIo)
2p: GUANIDINE (GAIp)
2q: GUANIDINE (GAIq)
2r: GUANIDINE (GAIr)
2s: GUANIDINE (GAIs)
2t: GUANIDINE (GAIt)
2u: GUANIDINE (GAIu)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
2
GAI
10
Ligand/Ion
GUANIDINE
3
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196 , HOH A:1923 , HOH A:2100
BINDING SITE FOR RESIDUE NA A 601
02
AC2
SOFTWARE
PHE A:70 , GLU A:157 , PRO A:158 , VAL A:159 , HOH A:1588 , TYR B:468
BINDING SITE FOR RESIDUE GAI A 801
03
AC3
SOFTWARE
ILE A:146 , ASP A:147 , PHE A:150 , HOH A:1334 , HOH A:2251 , HOH A:2614 , VAL B:458 , PHE B:459
BINDING SITE FOR RESIDUE GAI A 811
04
AC4
SOFTWARE
TYR A:153 , ARG A:155 , SER B:443 , PHE D:151
BINDING SITE FOR RESIDUE EDO A 901
05
AC5
SOFTWARE
GLN A:14 , ASN A:41 , THR A:44 , LEU A:108
BINDING SITE FOR RESIDUE EDO A 911
06
AC6
SOFTWARE
PHE A:18 , TYR A:101 , TYR A:203 , HOH A:1300 , HOH A:3317
BINDING SITE FOR RESIDUE EDO A 921
07
AC7
SOFTWARE
TYR A:441 , GLN A:444 , ALA A:445 , HOH A:533 , LEU B:72 , GLN C:497
BINDING SITE FOR RESIDUE EDO A 941
08
AC8
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:2152 , HOH B:2756
BINDING SITE FOR RESIDUE NA B 602
09
AC9
SOFTWARE
TYR A:468 , PHE B:70 , GLU B:157 , PRO B:158 , VAL B:159
BINDING SITE FOR RESIDUE GAI B 802
10
BC1
SOFTWARE
PHE A:459 , HOH A:1107 , ILE B:146 , ASP B:147 , PHE B:150
BINDING SITE FOR RESIDUE GAI B 812
11
BC2
SOFTWARE
SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
BINDING SITE FOR RESIDUE EDO B 902
12
BC3
SOFTWARE
GLN B:14 , ASN B:41 , THR B:44 , GLU B:46 , HOH B:2850
BINDING SITE FOR RESIDUE EDO B 912
13
BC4
SOFTWARE
LEU A:72 , TYR B:441 , GLN B:444 , ALA B:445 , HOH B:601 , HOH B:1909 , GLN D:497
BINDING SITE FOR RESIDUE EDO B 942
14
BC5
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:688 , HOH C:1967
BINDING SITE FOR RESIDUE NA C 603
15
BC6
SOFTWARE
PHE C:70 , GLU C:157 , PRO C:158 , VAL C:159 , HOH C:672 , HOH C:1098 , TYR D:468
BINDING SITE FOR RESIDUE GAI C 803
16
BC7
SOFTWARE
ILE C:146 , ASP C:147 , PHE C:150 , HOH C:2861 , PHE D:459
BINDING SITE FOR RESIDUE GAI C 813
17
BC8
SOFTWARE
PHE C:350 , ALA C:375 , ASP C:376 , GLY C:378
BINDING SITE FOR RESIDUE GAI C 823
18
BC9
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , SER D:443
BINDING SITE FOR RESIDUE EDO C 903
19
CC1
SOFTWARE
GLN C:14 , ASN C:41 , THR C:44 , GLU C:46 , LEU C:108
BINDING SITE FOR RESIDUE EDO C 913
20
CC2
SOFTWARE
PHE C:18 , TYR C:101 , TYR C:203 , HOH C:545 , HOH C:1875
BINDING SITE FOR RESIDUE EDO C 923
21
CC3
SOFTWARE
GLN A:497 , HOH A:534 , TYR C:441 , GLN C:444 , ALA C:445 , LEU D:72
BINDING SITE FOR RESIDUE EDO C 943
22
CC4
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:3277
BINDING SITE FOR RESIDUE NA D 604
23
CC5
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:1435
BINDING SITE FOR RESIDUE GAI D 804
24
CC6
SOFTWARE
PHE C:459 , ILE D:146 , ASP D:147 , PHE D:150 , HOH D:1785 , HOH D:3364
BINDING SITE FOR RESIDUE GAI D 814
25
CC7
SOFTWARE
GLN D:14 , PRO D:15 , LEU D:108 , HOH D:2409 , HOH H:1803
BINDING SITE FOR RESIDUE GAI D 833
26
CC8
SOFTWARE
PHE A:151 , SER C:443 , TYR D:153 , ARG D:155
BINDING SITE FOR RESIDUE EDO D 904
27
CC9
SOFTWARE
GLU D:414 , TYR D:441 , HOH D:2622 , LYS G:361 , HOH G:1321
BINDING SITE FOR RESIDUE EDO D 944
28
EC7
SOFTWARE
GLY C:45 , HOH C:1684 , GLU F:347 , PHE F:350 , GAI F:826
BINDING SITE FOR RESIDUE EDO F 966
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011869 (E320V, chain A/B/C/D, )
2: VAR_011302 (E479K, chain A/B/C/D, )
3: VAR_002248 (E487K, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
A/B/C/D
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
A/B/C/D
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
A/B/C/D
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:267-274,B:267-274,C:267-274,D:26...)
2: ALDEHYDE_DEHYDR_CYS (A:295-306,B:295-306,C:295-306,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
4
A:267-274
B:267-274
C:267-274
D:267-274
-
-
-
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
4
A:295-306
B:295-306
C:295-306
D:295-306
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3n81a_ (A:)
1b: SCOP_d3n81b_ (B:)
1c: SCOP_d3n81c_ (C:)
1d: SCOP_d3n81d_ (D:)
1e: SCOP_d3n81e_ (E:)
1f: SCOP_d3n81f_ (F:)
1g: SCOP_d3n81g_ (G:)
1h: SCOP_d3n81h_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d3n81a_
A:
1b
d3n81b_
B:
1c
d3n81c_
C:
1d
d3n81d_
D:
1e
d3n81e_
E:
1f
d3n81f_
F:
1g
d3n81g_
G:
1h
d3n81h_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3n81H01 (H:28-491)
1b: PFAM_Aldedh_3n81H02 (H:28-491)
1c: PFAM_Aldedh_3n81H03 (H:28-491)
1d: PFAM_Aldedh_3n81H04 (H:28-491)
1e: PFAM_Aldedh_3n81H05 (H:28-491)
1f: PFAM_Aldedh_3n81H06 (H:28-491)
1g: PFAM_Aldedh_3n81H07 (H:28-491)
1h: PFAM_Aldedh_3n81H08 (H:28-491)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Homo sapiens (Human)
(21)
1a
Aldedh-3n81H01
H:28-491
1b
Aldedh-3n81H02
H:28-491
1c
Aldedh-3n81H03
H:28-491
1d
Aldedh-3n81H04
H:28-491
1e
Aldedh-3n81H05
H:28-491
1f
Aldedh-3n81H06
H:28-491
1g
Aldedh-3n81H07
H:28-491
1h
Aldedh-3n81H08
H:28-491
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (697 KB)
Header - Asym.Unit
Biol.Unit 1 (349 KB)
Header - Biol.Unit 1
Biol.Unit 2 (350 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3N81
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help