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3N7U
Biol. Unit 2
Info
Asym.Unit (760 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (135 KB)
Biol.Unit 4 (135 KB)
Biol.Unit 5 (133 KB)
Biol.Unit 6 (135 KB)
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(1)
Title
:
NAD-DEPENDENT FORMATE DEHYDROGENASE FROM HIGHER-PLANT ARABIDOPSIS THALIANA IN COMPLEX WITH NAD AND AZIDE
Authors
:
I. G. Shabalin, K. M. Polyakov, A. E. Serov, O. E. Skirgello, E. G. Sadykh P. V. Dorovatovskiy, V. I. Tishkov, V. O. Popov
Date
:
27 May 10 (Deposition) - 09 Jun 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Homodimer, Holo-Form, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. G. Shabalin, K. M. Polyakov, O. E. Skirgello, V. I. Tishkov, V. O. Popov
Structures Of The Apo And Holo Forms Of Nad-Dependent Formate Dehydrogenase From The Higher-Plant Arabidopsis Thaliana
To Be Published
[
close entry info
]
Hetero Components
(4, 12)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
1c: AZIDE ION (AZIc)
1d: AZIDE ION (AZId)
1e: AZIDE ION (AZIe)
1f: AZIDE ION (AZIf)
1g: AZIDE ION (AZIg)
1h: AZIDE ION (AZIh)
1i: AZIDE ION (AZIi)
1j: AZIDE ION (AZIj)
1k: AZIDE ION (AZIk)
1l: AZIDE ION (AZIl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
3f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
3g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
3h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
3i: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADi)
3j: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADj)
3k: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADk)
3l: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
2
Ligand/Ion
AZIDE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC8 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
ILE C:122 , ASN C:146 , VAL C:147 , VAL C:150 , GLY C:200 , ARG C:201 , ILE C:202 , ASP C:221 , ARG C:222 , MET C:255 , PRO C:256 , ASN C:282 , ALA C:283 , ARG C:284 , ASP C:308 , VAL C:309 , HIS C:332 , SER C:334 , GLY C:335 , GLN C:376 , AZI C:403 , HOH C:430 , HOH C:548 , HOH C:549 , HOH C:551 , HOH C:552 , HOH C:553 , HOH C:554 , HOH C:555 , HOH C:557 , HOH C:558 , HOH C:559 , HOH C:667
BINDING SITE FOR RESIDUE NAD C 401
02
AC9
SOFTWARE
PRO C:97 , PHE C:98 , ILE C:122 , ASN C:146 , ARG C:284 , HIS C:332 , NAD C:401
BINDING SITE FOR RESIDUE AZI C 403
03
BC1
SOFTWARE
ARG C:354 , PRO C:362 , HOH C:665
BINDING SITE FOR RESIDUE SO4 C 3
04
BC2
SOFTWARE
ARG C:378 , HOH C:688 , ARG E:60 , ASP E:61
BINDING SITE FOR RESIDUE GOL C 10
05
BC3
SOFTWARE
TYR C:184 , ARG C:185 , ASN C:326
BINDING SITE FOR RESIDUE GOL C 17
06
BC4
SOFTWARE
HOH D:3 , HOH D:6 , ILE D:122 , ASN D:146 , VAL D:147 , VAL D:150 , GLY D:200 , ARG D:201 , ILE D:202 , ASP D:221 , ARG D:222 , MET D:255 , PRO D:256 , ASN D:282 , ALA D:283 , ARG D:284 , ASP D:308 , HIS D:332 , SER D:334 , GLY D:335 , GLN D:376 , AZI D:403 , HOH D:562 , HOH D:563 , HOH D:565 , HOH D:566 , HOH D:567 , HOH D:568 , HOH D:569 , HOH D:570 , HOH D:571 , HOH D:649
BINDING SITE FOR RESIDUE NAD D 401
07
BC5
SOFTWARE
PRO D:97 , PHE D:98 , ILE D:122 , ASN D:146 , ARG D:284 , HIS D:332 , NAD D:401
BINDING SITE FOR RESIDUE AZI D 403
08
BC6
SOFTWARE
ARG D:354 , PRO D:362 , HOH D:670
BINDING SITE FOR RESIDUE SO4 D 4
09
BC7
SOFTWARE
ARG D:378 , HOH J:11 , ASP J:61
BINDING SITE FOR RESIDUE GOL D 11
10
BC8
SOFTWARE
TYR D:184 , ARG D:185 , ASN D:326
BINDING SITE FOR RESIDUE GOL D 18
11
BC9
SOFTWARE
ASN D:170 , LYS D:174 , HOH D:506 , HOH D:579
BINDING SITE FOR RESIDUE GOL D 22
12
CC1
SOFTWARE
HIS D:126 , HOH D:391
BINDING SITE FOR RESIDUE GOL D 25
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_1 (C:194-221,D:194-221)
2: D_2_HYDROXYACID_DH_2 (C:244-266,D:244-266)
3: D_2_HYDROXYACID_DH_3 (C:273-289,D:273-289)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_1
PS00065
D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
FDH_ARATH
200-227
2
-
-
C:194-221
D:194-221
-
-
-
-
-
-
-
-
2
D_2_HYDROXYACID_DH_2
PS00670
D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
FDH_ARATH
250-272
2
-
-
C:244-266
D:244-266
-
-
-
-
-
-
-
-
3
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
FDH_ARATH
279-295
2
-
-
C:273-289
D:273-289
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (760 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Biol.Unit 2 (137 KB)
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Biol.Unit 3 (135 KB)
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Biol.Unit 4 (135 KB)
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Biol.Unit 5 (133 KB)
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Biol.Unit 6 (135 KB)
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